Locus 8562

Sequence ID 3L_DroMel_CAF1
Location 22,341,116 – 22,341,207
Length 91
Max. P 0.580298
window14034

overview

Window 4

Location 22,341,116 – 22,341,207
Length 91
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 73.12
Mean single sequence MFE -39.35
Consensus MFE -17.90
Energy contribution -20.40
Covariance contribution 2.50
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.45
SVM decision value 0.09
SVM RNA-class probability 0.580298
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22341116 91 + 23771897
GGGCGUGCUGCUUUGAGAACUUAAUCUUGGCGGCU-U-GGGGGC--UUUUGGCCAGACAGCCGGACAG---------------GAGAAGAAGAAGAGGAGGAGGACUCCG----------
.((.((.((.((((.....(((..(((((.(((((-.-(..(((--.....)))...))))))..)))---------------))....)))....)))).)).)).)).---------- ( -32.20)
>DroPse_CAF1 38561 120 + 1
GUGGAUGCUGCUUGGAGAACUUAAUCUUGGCGGCUUUUGCGGGCCCGGAUGGCCGGAUAGCCGGACAGCGGGGCGGAGUGGAAGAGAAGCAGAAAGGACAGAGGACUCCUGAAGCAGAGC
.......((((((((((..(((..((((.((..((((..(..((((.(.((.((((....)))).)).).))))...)..))))....))....))))..)))..))))..))))))... ( -47.40)
>DroEre_CAF1 8666 92 + 1
GGGCGUGCUGCUUUGAGAACUUAAUCUUGGCGGCUUU-GGGGGC--UUUUGGCCAGACAGCCGGACAG---------------GAAAAGAAGAAGAGGAGGAGGACUCCG----------
.((.((.((.((((.....(((..(((((.(((((..-...(((--.....)))....)))))..)))---------------))....)))....)))).)).)).)).---------- ( -30.40)
>DroPer_CAF1 38952 120 + 1
GUGGAUGCUGCUUGGAGAACUUAAUCUUGGCGGCUUUUGCGGGCCCGGAUGGCCGGAUAGCCGGACAGCGGGGCGGAGUGGAAGAGAAGCAGAAAGGACAGAGGACUCCUGAAGCAGAGC
.......((((((((((..(((..((((.((..((((..(..((((.(.((.((((....)))).)).).))))...)..))))....))....))))..)))..))))..))))))... ( -47.40)
>consensus
GGGCAUGCUGCUUGGAGAACUUAAUCUUGGCGGCUUU_GCGGGC__GGAUGGCCAGACAGCCGGACAG_______________GAGAAGAAGAAAAGAAAGAGGACUCCG__________
......((((((..((........))..))))))......((((((.((((.((((....)))).)))).)))).....................((........))))........... (-17.90 = -20.40 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:07 2006