Locus 8561

Sequence ID 3L_DroMel_CAF1
Location 22,340,048 – 22,340,140
Length 92
Max. P 0.750304
window14033

overview

Window 3

Location 22,340,048 – 22,340,140
Length 92
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 77.20
Mean single sequence MFE -28.45
Consensus MFE -19.16
Energy contribution -18.60
Covariance contribution -0.56
Combinations/Pair 1.18
Mean z-score -1.72
Structure conservation index 0.67
SVM decision value 0.47
SVM RNA-class probability 0.750304
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22340048 92 - 23771897
AAGUUUGAACAAAUUACGCCCCUUAUCGGCGAAUGCGGCCAAACAUUUUGCCUAAAUUAAACAAAUUAAGGCGGCAGUCCCAA---UGGGAGUGG-------------------------
..(((((..(..(((.((((.......)))))))..)..)))))...((((((.((((.....)))).))))))((.((((..---.)))).)).------------------------- ( -26.50)
>DroPse_CAF1 37552 119 - 1
AAGUUUGAGCAAAUUAUGGCGCUUAUCGCUGAAUGCGGCCAAACAUUUUGCAUAAAUUAAACAAAUUAAGGCAGC-GUCCCAGCCGAGGGAGUGGAAACUGGGAAACUGGGAAACUGAUA
.((((((.(((((...((((......(((.....))))))).....))))).)))))).............(((.-.((((((((.((..........)).))...))))))..)))... ( -31.30)
>DroEre_CAF1 7565 94 - 1
AAGUUUGAACAAAUUACGUCGCUUAUCGGCGAAUGCGGCCAAACAUUUUGCAUAAAUUAAACAAAUUAAGGCGGCAGUCCCGA---UGGGAGUGGGA-----------------------
.............((((....((((((((.((.(((.(((......((((...........))))....))).))).))))))---)))).))))..----------------------- ( -24.70)
>DroPer_CAF1 37937 119 - 1
AAGUUUGAGCAAAUUAUGGCGCUUAUCGCUGAAUGCGGCCAAACAUUUUGCAUAAAUUAAACAAAUUAAGGCAGC-GUCCCAGCCGAGGGAGUGGAAACUGGGAAACUGGGAAACUGAUA
.((((((.(((((...((((......(((.....))))))).....))))).)))))).............(((.-.((((((((.((..........)).))...))))))..)))... ( -31.30)
>consensus
AAGUUUGAACAAAUUACGGCGCUUAUCGCCGAAUGCGGCCAAACAUUUUGCAUAAAUUAAACAAAUUAAGGCAGC_GUCCCAA___AGGGAGUGGAA_______________________
..(((((..(..(((.(((((.....))))))))..)..)))))...((((...((((.....))))...))))((.((((......)))).)).......................... (-19.16 = -18.60 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:06 2006