Locus 8537

Sequence ID 3L_DroMel_CAF1
Location 22,318,116 – 22,318,236
Length 120
Max. P 0.545410
window13987

overview

Window 7

Location 22,318,116 – 22,318,236
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 99.17
Mean single sequence MFE -32.09
Consensus MFE -30.96
Energy contribution -31.02
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -1.75
Structure conservation index 0.96
SVM decision value 0.02
SVM RNA-class probability 0.545410
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22318116 120 - 23771897
UUCUCAUUUCCAUUCUCAUUGCUUUUGCCUUAUGCCUUGUCAUGCUUAAUUGCUUUGUUAAUUAAAUGUGUUAAGGCUGAGGAAAAAAGGAUAUUAAGGCGCGCAGGUCUGAAAGGGACA
.......((((.(((......(((((.(((((.((((((.(((..(((((((......)))))))..))).)))))))))))...)))))......((((......))))))).)))).. ( -31.40)
>DroSec_CAF1 76781 120 - 1
UUCUCAUUUCCAUUCUCAUUGCUUUUGCCUUAUGCCUUGUCAUGCUUAAUUGCUUUGUUAAUUAAAUGUGUUAAGGCUGAGGAAAAAAGGAUAUUAAGGCGCGCAGGUCUGAAAGGGACA
.......((((.(((......(((((.(((((.((((((.(((..(((((((......)))))))..))).)))))))))))...)))))......((((......))))))).)))).. ( -31.40)
>DroEre_CAF1 75071 120 - 1
UUCUCAUUUCCAUUCUCAUUGCUUUCGCCUUAUGCCUUGUCAUGCUUAAUUGCUUUGUUAAUUAAAUGUGUUAAGGCUGAGGAAAAAAGGAUAUUAAGGCGCGCAGGUCUGAAAGGGACA
.......((((.(((...((((...(((((((.((((((.(((..(((((((......)))))))..))).)))))).................))))))).))))....))).)))).. ( -31.17)
>DroYak_CAF1 55206 120 - 1
UUCUCAUUUCCAUUCUCAUUGCUUUUGCCUUAUGCCUUGUCAUGCUUAAUUGCUUUGUUAAUUAAAUGUGUUAAGGCUGAGGAAAAAGGGAUAUUAAGGCGCGCAGGUCUGAAAGGGACA
.......((((.(((..(((.(((((.(((((.((((((.(((..(((((((......)))))))..))).))))))))))).))))).)))....((((......))))))).)))).. ( -34.40)
>consensus
UUCUCAUUUCCAUUCUCAUUGCUUUUGCCUUAUGCCUUGUCAUGCUUAAUUGCUUUGUUAAUUAAAUGUGUUAAGGCUGAGGAAAAAAGGAUAUUAAGGCGCGCAGGUCUGAAAGGGACA
.......((((.(((......(((((.(((((.((((((.(((..(((((((......)))))))..))).)))))))))))...)))))......((((......))))))).)))).. (-30.96 = -31.02 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:24 2006