Locus 8535

Sequence ID 3L_DroMel_CAF1
Location 22,316,846 – 22,316,954
Length 108
Max. P 0.522318
window13985

overview

Window 5

Location 22,316,846 – 22,316,954
Length 108
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.34
Mean single sequence MFE -30.98
Consensus MFE -21.74
Energy contribution -22.68
Covariance contribution 0.94
Combinations/Pair 1.11
Mean z-score -1.45
Structure conservation index 0.70
SVM decision value -0.02
SVM RNA-class probability 0.522318
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22316846 108 + 23771897
GGGGC-----UUUAAGAGCGAGUAGUGAGUAGUGGUAGCAUCGAUUUGCUGUCUUUGACUUUCAAACUGUAGAACUGUUGACAUUUAACGACGACUAU----UCUCUACCAU---UUUCC
(((((-----((...))))(.((((.(((((((.((((((......))))(((...(((.(((........)))..))))))........)).)))))----)).)))))..---..))) ( -26.50)
>DroSec_CAF1 75511 115 + 1
GGGGC-----UUCAAGAGCGAGUAGUAAGUAGUAGUAGCAUCGAUUUGCUGUCUUUGACUUUCAAACUGCAGAACUGUUGACAUUUAACGACGACUAUUCGUUCUCUACCAUAGCUCUCC
(((((-----(...((((((((((((..((((((((((((......))))).))(((.....)))))))).....(((((........))))))))))))))))).......)))))).. ( -34.30)
>DroEre_CAF1 73879 117 + 1
GGGGCUUGGCUUCCAGAGCUAGUAGUAAGUGGUAGUAGCAUCGAUCUGCUGUCUUUGACUUUCAAACUGCAAAACUGUUGACAUUUAGCGACGACUACUCGUUCUCUGCCAU---UAUUC
(((...((((....(((((.((((((.(((.(((((((((......))))(((...)))......)))))...)))((((........)))).)))))).)))))..)))).---..))) ( -31.20)
>DroYak_CAF1 54009 111 + 1
GGGGU-----UUCAAGAGCGAGUAGUAAGUAGUAGAAGCAUCGAUUUGCUGGCUUUGACUUUGAAACUGCAA-AUUGUUGACAUUUAACGACGACUAUUCGUUCUCUACCAU---UUUCU
..(((-----....((((((((((((..((.((.(((.((.((((((((.((.(((......))).))))))-)))).))...))).)).)).))))))))))))..)))..---..... ( -31.90)
>consensus
GGGGC_____UUCAAGAGCGAGUAGUAAGUAGUAGUAGCAUCGAUUUGCUGUCUUUGACUUUCAAACUGCAAAACUGUUGACAUUUAACGACGACUAUUCGUUCUCUACCAU___UUUCC
..............((((((((((((((((...(((((((......))))).))...))))..............(((((........)))))))))))))))))............... (-21.74 = -22.68 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:22 2006