Locus 8526

Sequence ID 3L_DroMel_CAF1
Location 22,312,291 – 22,312,411
Length 120
Max. P 0.973134
window13965

overview

Window 5

Location 22,312,291 – 22,312,411
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.92
Mean single sequence MFE -35.82
Consensus MFE -29.94
Energy contribution -30.78
Covariance contribution 0.84
Combinations/Pair 1.11
Mean z-score -1.97
Structure conservation index 0.84
SVM decision value 1.71
SVM RNA-class probability 0.973134
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22312291 120 - 23771897
GCUCGGAUUAUGCAGCUGCAUAAUUAGUGCGAAAAGGGAAAAAACUAUGACUUCGCUGCCUUGGAUGUGCAGCUCGCAUAGUUUUUGGGGCAACAAAAAGAAAACUGCUCCAGACAAAGG
.....(((((((((((((((((.((((.(((((...((......)).....)))))....)))).))))))))).))))))))(((((((((.............)))))))))...... ( -37.82)
>DroSec_CAF1 70991 119 - 1
GCUCGGAUUAUGCAGCUGCAUAAUUAGUGCGAAAAGGGAAAAAACUAUGACUUCGCUGCCUGGGAUGUGCAGCUCGCAUAGUUUUUG-GGCAACAAAAAGAAGACGGCUCCAGACAAAGG
((((((((((((((((((((((.((((.(((((...((......)).....)))))...))))..))))))))).))))))))..))-)))............................. ( -35.80)
>DroSim_CAF1 52703 120 - 1
GCUCGGAUUAUGCAGCUGCAUAAUUAGUGCGAAAAGGGAAAAAACUAUGACUUCGCUGCCUGGGAUGUGCAGCUCGCAUAGUUUUUGGGGCAACAAAAAGAAGACGGCUCCAGACAAAGG
.....(((((((((((((((((.((((.(((((...((......)).....)))))...))))..))))))))).))))))))((((((((..(........)...))))))))...... ( -38.70)
>DroEre_CAF1 69382 120 - 1
GCUCGGAUUAUGCAGCUGCAUAAUUAGUGCGAAAAGGGAAAAAACUAUGGCUUCGCUGGCUGGGAUGUGCAGCCUGAAUGGUUUUUGGGGCAACAAAAAGGAGACGGCUCCAGACAAAGG
.....((((((.((((((((((.((((((((((...((......)).....)))))..)))))..))))))).))).))))))((((((((........(....).))))))))...... ( -34.80)
>DroYak_CAF1 49478 120 - 1
GCUCGGAUUAUGCAUCUGCAUAAUUAGUGCGCAAAGGAAAAAAACUAUGACUUUGCUGUCUGGGAUGUGCAGAUUGAAUUGUUUUUGGCGCAACAAAAAGUAGACGGCUCUAGACAAAGG
((.(.((((((((....)))))))).).))((((((..(........)..))))))(((((((..(((((.(((......)))....)))))......(((.....)))))))))).... ( -32.00)
>consensus
GCUCGGAUUAUGCAGCUGCAUAAUUAGUGCGAAAAGGGAAAAAACUAUGACUUCGCUGCCUGGGAUGUGCAGCUCGCAUAGUUUUUGGGGCAACAAAAAGAAGACGGCUCCAGACAAAGG
.....(((((((((((((((((.((((.(((((.((........)).....)))))...))))..))))))))).))))))))((((((((...............))))))))...... (-29.94 = -30.78 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:03 2006