Locus 8512

Sequence ID 3L_DroMel_CAF1
Location 22,302,354 – 22,302,459
Length 105
Max. P 0.713575
window13935

overview

Window 5

Location 22,302,354 – 22,302,459
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.62
Mean single sequence MFE -20.99
Consensus MFE -15.36
Energy contribution -15.40
Covariance contribution 0.04
Combinations/Pair 1.07
Mean z-score -1.87
Structure conservation index 0.73
SVM decision value 0.38
SVM RNA-class probability 0.713575
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22302354 105 - 23771897
UCG-------CGUGCUGGCUCAUUAAUAUUUAGCCGGCUCAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACCUCUUCCCAGUUCCCCUGUUC--------UCCUGCUCCGCCU
..(-------((.(((((((.(.......).)))))))..(((...((((.......(((((.......................)))))....)))).--------....))).))).. ( -17.20)
>DroSec_CAF1 60979 105 - 1
UCG-------CGUGCUGGCUCAUUAAUAUUUAGCCGGCACAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACCUCUUCGCAGUUCCCCAGUUC--------UCCUGCUCCGCCU
..(-------((((((((((.(.......).)))))))))............................................((((...........--------..))))...)).. ( -20.72)
>DroSim_CAF1 43044 105 - 1
UCG-------CGUGCUGGCUCAUUAAUAUUUAGCCGGCACAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACCUCUUCGCAGUUCCCCAGCUC--------UCCUGCUCCGCCU
..(-------((((((((((.(.......).)))))))))............................................((((...........--------..))))...)).. ( -20.72)
>DroEre_CAF1 59414 120 - 1
UCGCGUGCUCCGUGCUGGCUCAUUAAUAUUUAGCCGGCACAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACCUCCUCCCAGUUCCCCUGGUCCCCUGUUGCCCUGCUCCGCCU
..(((......(((((((((.(.......).)))))))))(((..(((((...........((.....))..............((((.....)))).....)))))....))).))).. ( -26.00)
>DroYak_CAF1 36658 104 - 1
UCGCGUGCUCCGUGCUGGCUCAUUAAUAUUUAGCCGGCAUAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACUUCUUCCCAGUUCCC----------------CUGCUCCGCCU
(((.(.(((..(((((((((.(.......).)))))))))))).)))).........(((((.......................)))))...----------------........... ( -20.30)
>consensus
UCG_______CGUGCUGGCUCAUUAAUAUUUAGCCGGCACAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACCUCUUCCCAGUUCCCCAGUUC________UCCUGCUCCGCCU
...........(((((((((.(.......).))))))))).................(((((.......................))))).............................. (-15.36 = -15.40 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:34 2006