| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,297,651 – 22,297,807 |
| Length | 156 |
| Max. P | 0.937345 |
| Location | 22,297,651 – 22,297,767 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.11 |
| Mean single sequence MFE | -33.33 |
| Consensus MFE | -25.44 |
| Energy contribution | -26.50 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22297651 116 - 23771897 AUCCGGGCAACGACGGGACUAAACACAGCUGUAACCACAGCGAAUGCCGUAACGCAUUGUCCACGCCAUUACCAA----UGUGGAAUAUCCUGCGAUUCACGGUAUGCGAUAAACCAUAU .((((........))))..........(((((....)))))(.(((((((((((((...((((((..........----))))))......)))).)).))))))).)............ ( -29.90) >DroSec_CAF1 56221 108 - 1 AUCCGUGCAACAACGGGACUAAACACAGCUGUAACCACAGCGAAUGCCGCAAGGCAUUGUCCACGCCAUU------------GGAAUAUCCUGCGAUUCACGGUAUGCGAUAAACCAUAU ..(((((........((((........(((((....))))).((((((....)))))))))).(((....------------((.....)).)))...)))))................. ( -34.80) >DroEre_CAF1 54843 114 - 1 AUCCGA-----AACGGGACUAAACGCAGCUGUAACCGCAGCGAAUGCCGCA-GGCAUUGUCCACGCAAUUACCAACGCAUGUGGAAUAUCCUGCGAUACACGGUAUGCGAUAAGCCAUAU ......-----....((.((...(((.(((((....)))))..((((((((-((.....(((((((..........))..)))))....)))))(.....)))))))))...)))).... ( -32.90) >DroYak_CAF1 21025 115 - 1 AUUUGG-----GAUGGGACUAAACACAGCUGUAACCGCAGCGAAUGCCGCAAGGCAUUGUCCACGCAAUUACCAACGCAUGUGAAAUAUCCUGCGAUUCACAGAAUGCGAUAAACCAUAU ...(((-----(...((((........(((((....))))).((((((....))))))))))...).........((((((((((...........))))))...)))).....)))... ( -35.70) >consensus AUCCGG_____AACGGGACUAAACACAGCUGUAACCACAGCGAAUGCCGCAAGGCAUUGUCCACGCAAUUACCAA____UGUGGAAUAUCCUGCGAUUCACGGUAUGCGAUAAACCAUAU .............((((((........(((((....))))).((((((....)))))))))).))..............(((((..((((((((........))).).))))..))))). (-25.44 = -26.50 + 1.06)
| Location | 22,297,691 – 22,297,807 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.97 |
| Mean single sequence MFE | -29.25 |
| Consensus MFE | -24.41 |
| Energy contribution | -24.10 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22297691 116 - 23771897 GACUAAAUAGUCAGGAAAGUAAUACCCCAUGAGCAACUGAAUCCGGGCAACGACGGGACUAAACACAGCUGUAACCACAGCGAAUGCCGUAACGCAUUGUCCACGCCAUUACCAA----U ((((....))))......(((((..(((..((.........)).)))....(.((((((........(((((....))))).(((((......))))))))).)).))))))...----. ( -25.90) >DroSec_CAF1 56259 110 - 1 AAAUAAAUAGUCAGGAAAGUAAUACCCUAUGGGCAACUGAAUCCGUGCAACAACGGGACUAAACACAGCUGUAACCACAGCGAAUGCCGCAAGGCAUUGUCCACGCCAUU---------- ............(((..(....)..)))...(((.........(((......)))((((........(((((....))))).((((((....))))))))))..)))...---------- ( -32.70) >DroEre_CAF1 54883 114 - 1 GAAUAAAUAGUCAGGAAAGUAAUACCCCAUGGGCAACUAAAUCCGA-----AACGGGACUAAACGCAGCUGUAACCGCAGCGAAUGCCGCA-GGCAUUGUCCACGCAAUUACCAACGCAU .......(((((.................(((....)))...(((.-----..))))))))...((.(((((....))))).((((((...-))))))......)).............. ( -25.30) >DroYak_CAF1 21065 115 - 1 ACAUAAUUAGUCAGGAAAGUAAUACCCCAUGGGCAACUGAAUUUGG-----GAUGGGACUAAACACAGCUGUAACCGCAGCGAAUGCCGCAAGGCAUUGUCCACGCAAUUACCAACGCAU ..................(((((..((((.((....)).....)))-----)...((((........(((((....))))).((((((....)))))))))).....)))))........ ( -33.10) >consensus AAAUAAAUAGUCAGGAAAGUAAUACCCCAUGGGCAACUGAAUCCGG_____AACGGGACUAAACACAGCUGUAACCACAGCGAAUGCCGCAAGGCAUUGUCCACGCAAUUACCAA____U .............(((.(((....(((...)))..)))...))).........((((((........(((((....))))).((((((....)))))))))).))............... (-24.41 = -24.10 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:22 2006