Locus 8502

Sequence ID 3L_DroMel_CAF1
Location 22,293,998 – 22,294,117
Length 119
Max. P 0.568131
window13916

overview

Window 6

Location 22,293,998 – 22,294,117
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.71
Mean single sequence MFE -30.98
Consensus MFE -23.86
Energy contribution -27.55
Covariance contribution 3.69
Combinations/Pair 1.15
Mean z-score -1.51
Structure conservation index 0.77
SVM decision value 0.07
SVM RNA-class probability 0.568131
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22293998 119 + 23771897
UCAAUUCAGUAGCCAGCUGGG-GGAAUCUAGUUCAACGAUAUGCUUCGAGUGAUUGAAGUGUAUCUUAAAGAUAUUCUAUCUUUAUGCCAUGUUCUUGGCUUUCAUGCAUACCGAUUAUU
.....((.(((((.(((((((-....)))))))....((((((((((((....)))))))))))).((((((((...)))))))).((((......))))......)).))).))..... ( -32.70)
>DroSec_CAF1 52504 119 + 1
UCAAUUCGGUAGCCAGCUGGGGGGAAUAUAGUUCAGCGAUACGCUUCGAGUGAUUGACGUGUAUCUUA-AGAUAUUCUAUCUUUGUGCCUUGUUCUUGGCUUCCAUGCAUCCCGAUUAUU
.......((.((((((..(.((((.(((.........(((((((.((((....)))).)))))))..(-(((((...))))))))).)))).)..)))))).))................ ( -32.20)
>DroEre_CAF1 51253 120 + 1
UCCAUUUGGUAGCCAGCUGGGGGGAAUGUAGUUCAACGAUACGCUUCGAGUGAUUGAAGUGCGUCUUAAAAAUAUUCUAUCUAUAUUCCAUGUUCUUGGCUUUCAUGCAUCCCGAUUAUU
......(((.((((((..(.(.(((((((((......((..((((((((....))))))))..))...............))))))))).).)..)))))).)))............... ( -31.20)
>DroYak_CAF1 17180 119 + 1
UCAAUUCGGUAGCCAGCUGGG-GGAAUCUAGUUCAACGAUUCGCUUCGAGUAAUUGAAGUGUAUCCUAAAGAUAUUCUUUCUAUAUUCAAUGUUCUUGGCUUUCAUGCAUCCCGAUUAUU
.....((((..((.(((..((-(((((.(((......(((.((((((((....)))))))).)))..((((.....))))))).)))).....)))..))).....))...))))..... ( -27.80)
>consensus
UCAAUUCGGUAGCCAGCUGGG_GGAAUCUAGUUCAACGAUACGCUUCGAGUGAUUGAAGUGUAUCUUAAAGAUAUUCUAUCUAUAUGCCAUGUUCUUGGCUUUCAUGCAUCCCGAUUAUU
.......((.((((((..(.(.(((((((((......((((((((((((....))))))))))))....((.....))..))))))))).).)..)))))).))................ (-23.86 = -27.55 +   3.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:15 2006