Locus 8490

Sequence ID 3L_DroMel_CAF1
Location 22,283,504 – 22,283,624
Length 120
Max. P 0.740870
window13896

overview

Window 6

Location 22,283,504 – 22,283,624
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.98
Mean single sequence MFE -37.65
Consensus MFE -24.58
Energy contribution -26.95
Covariance contribution 2.37
Combinations/Pair 1.03
Mean z-score -1.92
Structure conservation index 0.65
SVM decision value 0.45
SVM RNA-class probability 0.740870
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22283504 120 + 23771897
CAGCCACCAGCACGUGUACCAAGCUUGUUGGCUCUGCUGCUCCUGCUGCCUCUGCUGCUGCCUUUAUUGAAACUAUUUUCACAGAGUUUAAGCGGGUGCGACUGCGGGUGUAUGUGGCGU
..(((((..((((.((((...((((....))))....(((.((((((..((((((....))......(((((....))))).))))....)))))).)))..)))).))))..))))).. ( -40.50)
>DroSec_CAF1 41888 95 + 1
CAGCCACCAGCACGUGUACCAAGCUUGUUGGCUCUG------------------CUGCUGCCUUUAUAGAAACUAUUUUCACAGAGUUUAAGCUG-------UGCGGGUGUAUGUGGCGU
..(((((..((((.(((((..((((((..(((((((------------------(....)).......((((....))))..)))))))))))))-------)))).))))..))))).. ( -34.30)
>DroSim_CAF1 33915 113 + 1
CAGCCACCAGCACGUGUAGCAAGCUUGUUGGCUCUGCUGCUCCUGCUGCCUCUGCUGCUGCCUUUAUUGAAACUAUUUUCACAGAGUUUAAGCUG-------UGCGGGUGUAUGUGGCGU
..((((((((((.(.((((((((((....)))).)))))).).)))))..(((((.(((..((((..(((((....))))).))))....)))..-------.))))).....))))).. ( -41.10)
>DroEre_CAF1 40486 108 + 1
CAGGCACCAGCACGUGUACCAAGCUUGUUUG-----CUGGCUCUGCUGCUUCUGCUGCUGUCUUUAUUGAAACUAUUUUCACAGAGUUUAAGCUG-------UGCGGGUGUAUGUGGUGU
...((((((((((.(((((..((((((...(-----(((((...((.((....)).)).))).....(((((....)))))...))).)))))))-------)))).))))...)))))) ( -34.70)
>consensus
CAGCCACCAGCACGUGUACCAAGCUUGUUGGCUCUGCUGCUCCUGCUGCCUCUGCUGCUGCCUUUAUUGAAACUAUUUUCACAGAGUUUAAGCUG_______UGCGGGUGUAUGUGGCGU
..(((((..((((.((((...((((((...((((((........((.((....)).))..........((((....)))).)))))).))))))........)))).))))..))))).. (-24.58 = -26.95 +   2.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:56 2006