Locus 8472

Sequence ID 3L_DroMel_CAF1
Location 22,273,639 – 22,273,759
Length 120
Max. P 0.862385
window13858

overview

Window 8

Location 22,273,639 – 22,273,759
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.00
Mean single sequence MFE -34.02
Consensus MFE -30.66
Energy contribution -31.23
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.90
Structure conservation index 0.90
SVM decision value 0.83
SVM RNA-class probability 0.862385
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22273639 120 - 23771897
CUCUAUGCAUAUCCGCAAGCAGGCUUUGGGGAUAAAAACAUUCGAAAGUGGAGUGAAAAUUGUUGGCAACAGCAAUGGCAACGCUGCCGCGGCGGCCCAACAAACCGAAAAAAGCCAAAC
......((.(((((.((((.....)))).)))))......((((....(((.((....(((((((....)))))))....))(((((....))))))))......))))....))..... ( -35.40)
>DroSec_CAF1 32073 120 - 1
CUCUAUGCAUAUCCGCAAGCAGGCUUUGGGGAUAAAAACAUUCGAAAGUGGAGUGAAAAUUGUUGGCAACAGCAAUGGCAACGCUGCCGCGGCGGCCCAAAAAACCGAAAAAAGCCAAAC
......((.(((((.((((.....)))).)))))......((((....(((.((....(((((((....)))))))....))(((((....))))))))......))))....))..... ( -35.40)
>DroSim_CAF1 23646 120 - 1
CUCUAUGCAUAUCCGCAAGCAGGCUUUGGGGAUAAAAACAUUCGAAAGUGGAGUGAAAAUUGUUGGCAACAGCAAUGGCAACGCUGCCGCGGCGGCCCAACAAACCGAAAAAAGCCAAAC
......((.(((((.((((.....)))).)))))......((((....(((.((....(((((((....)))))))....))(((((....))))))))......))))....))..... ( -35.40)
>DroEre_CAF1 30826 114 - 1
CUCUAUGCAUAUCCGCAAGCAGGCUUUGGGGAUAAAAACAUUCGA-AGUGGAGUGAAAAUGGUUGGCAACAGCAGCGGCAGCG-----GCGGCGGCCCAACAAACCGAAAAAAGCCAAAU
.....(((......)))....((((((..((.......(((((..-....)))))......(((((.....((.((.((....-----)).)).)))))))...))....)))))).... ( -29.90)
>consensus
CUCUAUGCAUAUCCGCAAGCAGGCUUUGGGGAUAAAAACAUUCGAAAGUGGAGUGAAAAUUGUUGGCAACAGCAAUGGCAACGCUGCCGCGGCGGCCCAACAAACCGAAAAAAGCCAAAC
.....(((......)))....((((((..((.......(((((.......)))))...(((((((....)))))))(((..(((....)))...))).......))....)))))).... (-30.66 = -31.23 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:19 2006