Locus 8470

Sequence ID 3L_DroMel_CAF1
Location 22,273,039 – 22,273,157
Length 118
Max. P 0.899108
window13855

overview

Window 5

Location 22,273,039 – 22,273,157
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.13
Mean single sequence MFE -24.12
Consensus MFE -18.21
Energy contribution -19.77
Covariance contribution 1.56
Combinations/Pair 1.05
Mean z-score -2.15
Structure conservation index 0.75
SVM decision value 1.01
SVM RNA-class probability 0.899108
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22273039 118 + 23771897
GUAAGCCAAACGCCCAGCUGCGCUCUCGCAGGACUAAAACAAAUGUCUUGGAUAAAAAAUGAGUACAACUCACACA--CACACCAAAUUAUGUGGCACGCAGCAAAAUCAAGACAAAGCU
...(((...........(((((....)))))............((((((((........((((.....))))....--((((........))))((.....))....))))))))..))) ( -24.50)
>DroSec_CAF1 31447 118 + 1
GUAAGCCAAACGCCCAGCUGCGCUCUCGCAGGACUAAAACAAAUGUCUUGGAUAAAAAAUGAGUGCAACUCACACA--CACACAAAAUUAUGUGGCACGCAGCAAAAUCAAGACAAAGCU
...(((...........(((((....)))))............((((((((........((((.....))))....--..((((......))))((.....))....))))))))..))) ( -24.90)
>DroSim_CAF1 23023 120 + 1
GUAAGCCAAACGCCCAGCUGCGCUCUCGCAGGACUAAAACAAAUGUCUUGGAUAAAAAAUGAGUACAACUCACACACACACACAAAAUUAUGUGGCACGCAGCAAAAUCAAGACAAAGCU
...(((...........(((((....)))))............((((((((........((((.....))))........((((......))))((.....))....))))))))..))) ( -24.90)
>DroEre_CAF1 30269 94 + 1
--------AACGCCCAGCUGCGUU--------------GCAAAUGCCUUGUAUAAAAAAUGAGUACAACUCACACA----CGCAAAAUUAUGUGGCACGCAGCAAAAUCAAGACAAAGCU
--------........(((((((.--------------((...................((((.....))))....----((((......)))))))))))))................. ( -22.20)
>consensus
GUAAGCCAAACGCCCAGCUGCGCUCUCGCAGGACUAAAACAAAUGUCUUGGAUAAAAAAUGAGUACAACUCACACA__CACACAAAAUUAUGUGGCACGCAGCAAAAUCAAGACAAAGCU
................((((((......((((((..........)))))).........((((.....))))........((((......))))...))))))................. (-18.21 = -19.77 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:16 2006