Locus 847

Sequence ID 3L_DroMel_CAF1
Location 2,567,932 – 2,568,023
Length 91
Max. P 0.991262
window1305

overview

Window 5

Location 2,567,932 – 2,568,023
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 93.30
Mean single sequence MFE -34.10
Consensus MFE -30.60
Energy contribution -30.36
Covariance contribution -0.24
Combinations/Pair 1.17
Mean z-score -1.83
Structure conservation index 0.90
SVM decision value 2.26
SVM RNA-class probability 0.991262
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2567932 91 - 23771897
UCGUCGCCUCGCUGCUACGGCAUGUGCGCCGCUGUGGUUGUGUGUGUGCUUCACCCACAGAUGAGGCCAAAAUAAUAGGCUUUAAGGCGGC
..(((((((.((..(..((((......))))..)..))((((.(((.....))).))))..(((((((.........)))))))))))))) ( -36.10)
>DroSec_CAF1 29487 91 - 1
UCGUCGCCUCGCUGCUACGGCAUGUGCGCCGCUGUGGUUGUGUGUGUACUUCAUCCACAGAUGGGGCCAAAAUAAUAGGCUUUAAGGCGGC
..(((((((.(((((....)).((.((.(((((((((.((.((....))..)).)))))).))).))))........)))....))))))) ( -35.90)
>DroSim_CAF1 26956 91 - 1
UCGUCGCCUCGCUGCUUCGGCAUGUGCGCCGCUGUGGCUGUGUGUGUACUUCACCCACAGAUGAGGCCAAAAUAAUAGGCUUUAAGGCGGC
..(((((((.((..(..((((......))))..)..))((((.(((.....))).))))..(((((((.........)))))))))))))) ( -38.50)
>DroEre_CAF1 43835 91 - 1
UCGUCGCCUCACUGCUACGGCAUGUGCGCCACUGUGGUUGUGAGUGUGCUUCACCCACAGAUGAGGCCAAAAUAAUAGGCUUUAAUGCGGU
.....(((.((((((....))).))).((..((((((..(((((.....))))))))))).(((((((.........)))))))..))))) ( -31.40)
>DroYak_CAF1 28392 91 - 1
UCGUCGCCUCACUGCUACGGCAUGUGCGCCACUGUGGUUGUGAGUGUGCUUCACCCACAGAUGAGGUCAAAAGAAUAGGCUUUAAUGCGGA
...((((..((((((....))).))).(((.((((((..(((((.....))))))))))).((....))........)))......)))). ( -28.60)
>consensus
UCGUCGCCUCGCUGCUACGGCAUGUGCGCCGCUGUGGUUGUGUGUGUGCUUCACCCACAGAUGAGGCCAAAAUAAUAGGCUUUAAGGCGGC
..(((((((((((((....))).))).....((((((..(((.........))))))))).(((((((.........)))))))))))))) (-30.60 = -30.36 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:40 2006