| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,266,030 – 22,266,138 |
| Length | 108 |
| Max. P | 0.891276 |
| Location | 22,266,030 – 22,266,138 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.21 |
| Mean single sequence MFE | -37.03 |
| Consensus MFE | -29.62 |
| Energy contribution | -30.25 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.891276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22266030 108 - 23771897 UGGGGGCCUAUAAGUUCACCUUGGGCUGAUCAGAGGAAACUCGAAUCUUUCGGCCCGUUCUGAAUUACAGCACAUCGGUUGAUGUUCAGUCGAAUGUGAA------UG------CGAAUG .....((.....((((((...((((((((...(((....))).......))))))))...))))))....(((((((..((.....))..)).)))))..------.)------)..... ( -35.20) >DroSec_CAF1 24321 114 - 1 UGAGGGCCUAUAAGUUCACCUUGGGCUGAUCAGAGGAAACUCGAAUCUAUCGGCCCGUUCUGAAUUACAGCACUUCGAUUGAUGUUCAGUCGAAUGUGAAUGUGAAUG------CGAAUG ...(((((.((((((((.....)))))(((..(((....)))..)))))).)))))((((....(((((.(((((((((((.....)))))))).)))..)))))...------.)))). ( -41.60) >DroSim_CAF1 14541 120 - 1 UGGGGGCCUAUAAGUUCACCUUGGGCUGAUCAGAGGAAACUCGAAUCUUUCGGCCCGUUCUGAAUUACAGCACUUCGAUUGAUGUUCAGUCGAAUGUGAAUGUGAAUGCGAAUGCGAAUG ...(((((....(((((.....)))))(((..(((....)))..)))....)))))((((....(((((.(((((((((((.....)))))))).)))..)))))..((....)))))). ( -42.30) >DroEre_CAF1 23287 107 - 1 GGGGUAGCUAUAAGUUCACAUUGGGGUGAUCAGAGGAAACUCGAGUCC-UCGGCCCGUUCUGAGUUACAGCACUUCGAUUGAUGUUCAGUGAAAUGUGAA------UG------CGAAUG (((((.(((.(((.((((...((((.(((...(((....)))......-))).))))...))))))).))))))))..(((.((((((........))))------))------)))... ( -29.00) >consensus UGGGGGCCUAUAAGUUCACCUUGGGCUGAUCAGAGGAAACUCGAAUCUUUCGGCCCGUUCUGAAUUACAGCACUUCGAUUGAUGUUCAGUCGAAUGUGAA______UG______CGAAUG ............((((((...((((((((...(((....))).......))))))))...))))))....(((((((((((.....)))))))).)))...................... (-29.62 = -30.25 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:50 2006