Locus 8430

Sequence ID 3L_DroMel_CAF1
Location 22,139,198 – 22,139,304
Length 106
Max. P 0.929421
window13787

overview

Window 7

Location 22,139,198 – 22,139,304
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.68
Mean single sequence MFE -18.02
Consensus MFE -14.14
Energy contribution -13.45
Covariance contribution -0.69
Combinations/Pair 1.35
Mean z-score -1.24
Structure conservation index 0.78
SVM decision value 1.20
SVM RNA-class probability 0.929421
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22139198 106 - 23771897
CUUUCCCAAGCUGUUUUAUCUCGGCUGACAGAUUAUAGCGCAUAGAAAAAAGUUAUCCAUCUGUCUUGUCCUCGACAAAGCAC---CCUCCUCCUACUUAUCC--------CC---UCCC
........(((((........)))))(((((((.(((((............)))))..)))))))(((((...))))).....---.................--------..---.... ( -18.50)
>DroSec_CAF1 125035 107 - 1
CUUUCCCAAGCUGCUUUAUCCCGGCUGACAGAUUAUAGCGCAUAGAAAAAAGUUAUCCAUCUGUCUUAUCCUCGACAAAGCGC---CCUCCUCCCACUUAUCCC-------CC---UCCC
.........((.(((((.((..((..(((((((.(((((............)))))..)))))))....))..)).)))))))---..................-------..---.... ( -20.10)
>DroSim_CAF1 133931 107 - 1
CUUUCCCAAGCUGCUUUAUCCCGGCUGACAGAUUAUAGCGCAUAGAAAAAAGUUAUCCAUCUGUCUUAUCCUCGACAAAGCGC---CCUCCUCCCACUUAUCCC-------CC---UCCC
.........((.(((((.((..((..(((((((.(((((............)))))..)))))))....))..)).)))))))---..................-------..---.... ( -20.10)
>DroEre_CAF1 124688 93 - 1
CUUUCCCAAGCUGUUUUAUCCCGGCUGACAGAUUAUAGCGUAUAGAAAAAAGUUAUCCAUCUGUCUUAUCCUCGACAACGAAGCGACCC---------------------------GCCC
........(((((........)))))(((((((.(((((............)))))..)))))))......(((....))).(((...)---------------------------)).. ( -17.50)
>DroYak_CAF1 173295 90 - 1
CUUUCCCAAGUUAUUUUAUCUUGGCUGACAGAUUAUGGCGCAUAGAAAAAAGUUGUCCAUCUGUCUUAUCGUCGACAAAGAAC---CCU---------------------------ACCC
((((.(((((.........)))))..((((((...(((.(((...........))))))))))))...........))))...---...---------------------------.... ( -14.90)
>DroAna_CAF1 141323 113 - 1
CUUUCCCAAGCUGUUUUAUCCCAUCUGACAGAUUAUAGCGCAUAGAAAAAAGUUGUCUAUUCGUCUUCCUACCGGCCCUGG-------UCCUGUCCCUUGCCCGGCUCUCCGCUCCGCUC
..........................(((((......(((.(((((.........))))).))).........(((....)-------)))))))....((..(((.....)))..)).. ( -17.00)
>consensus
CUUUCCCAAGCUGUUUUAUCCCGGCUGACAGAUUAUAGCGCAUAGAAAAAAGUUAUCCAUCUGUCUUAUCCUCGACAAAGCAC___CCUCCUCCCACUUAUCC________CC___UCCC
........(((((........)))))(((((((.(((((............)))))..)))))))....................................................... (-14.14 = -13.45 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:15:10 2006