Locus 8419

Sequence ID 3L_DroMel_CAF1
Location 22,124,906 – 22,125,000
Length 94
Max. P 0.605812
window13769

overview

Window 9

Location 22,124,906 – 22,125,000
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 94.26
Mean single sequence MFE -32.67
Consensus MFE -30.26
Energy contribution -31.02
Covariance contribution 0.75
Combinations/Pair 1.11
Mean z-score -0.99
Structure conservation index 0.93
SVM decision value 0.15
SVM RNA-class probability 0.605812
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22124906 94 + 23771897
AGCUGAAGGCCCCAUCUUCCGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAUUUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG
.(((((((((((........)))).....((((((((((((((......))))))))......)))))).....)))))))............. ( -31.20)
>DroSec_CAF1 110705 94 + 1
AGCUGAAGGCCCCAUCUUCGGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAAGUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG
.(((((.((((((......)))))).)))))(((((((((((((.((((......))))))).))(((....)))...))))).)))....... ( -35.50)
>DroSim_CAF1 118796 94 + 1
AGCUGAAGGCCCCAUCUUCGGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAAGUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG
.(((((.((((((......)))))).)))))(((((((((((((.((((......))))))).))(((....)))...))))).)))....... ( -35.50)
>DroEre_CAF1 109616 94 + 1
AGCUCAAGGCCCCAUCUUCGGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAAGUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG
.......((((((......))))))....(((((((((((((((.((((......))))))).))(((....)))...))))).)))))..... ( -32.00)
>DroYak_CAF1 153387 94 + 1
AGCUCAAGGCCCCAUCUUCGGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAAGUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG
.......((((((......))))))....(((((((((((((((.((((......))))))).))(((....)))...))))).)))))..... ( -32.00)
>DroAna_CAF1 128374 88 + 1
AGCUGGGGGCUCC-CCUUC-GGGCCAUUAGUGCG---UUGUUUUCGGCGGGACAAUGCCA-GUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG
.((.((((....)-)))..-.((((....(((((---(....((.((((......)))))-).))))))....((....))))))))....... ( -29.80)
>consensus
AGCUGAAGGCCCCAUCUUCGGGGCUAUUAGUGCGUCGUUGUCUUCGGCGGGACAAUGCCAAGUGCGCAUAUUUGCUUUAGCGGCCGCAUCUUCG
.(((((.((((((......)))))).)))))(((((((((.....((((......))))......(((....)))..)))))).)))....... (-30.26 = -31.02 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:53 2006