| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,116,548 – 22,116,644 |
| Length | 96 |
| Max. P | 0.918766 |
| Location | 22,116,548 – 22,116,644 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 78.94 |
| Mean single sequence MFE | -32.72 |
| Consensus MFE | -23.22 |
| Energy contribution | -23.08 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22116548 96 - 23771897 UCUC--AGUUGCCAUCGCAGCUGUCUGCGCAUAUUUGGUGUGCGGUUACAUUUGAUUACAUGCCAAAAGUGCUCGCCCAGC----------------CGCCCCCUGUUCAGCCA---- ....--.((((.((..((.((((..((.((((.(((((((((..((((....))))..))))))))).)))).))..))))----------------.))....))..))))..---- ( -31.10) >DroSim_CAF1 110274 96 - 1 CCUC--AGUUGCCAUCGCAGCUGUCUGCGCAUAUUUGGUGUGCGGUUACAUUUGAUUACAUGCCAAAAGUGCUCGCCCAGC----------------CGCCCCCUGUUCAGCCA---- ....--.((((.((..((.((((..((.((((.(((((((((..((((....))))..))))))))).)))).))..))))----------------.))....))..))))..---- ( -31.10) >DroEre_CAF1 101656 93 - 1 CC-----GUUGCCAUCGCAGCUGUCUGCGCAUAUUUGGUGUGCGGUUACAUUUGAUUACAUGCCAAAAGUGCUCUCCCAGC----------------CGCCCCCUGUUCAGCUA---- ..-----((((.((..((.((((...(.((((.(((((((((..((((....))))..))))))))).)))).)...))))----------------.))....))..))))..---- ( -29.50) >DroYak_CAF1 145324 92 - 1 CC-----GUUGCCAUCGCAGCUGUCUGCGCAUAUUUGGUGUGCGGUUACAUUUGAUUACAUGCCAAAAGUGCUCUCCCAGU----------------CGCC-CUUGUUCAGCAA---- ..-----((((.((..((.((((...(.((((.(((((((((..((((....))))..))))))))).)))).)...))))----------------.)).-..))..))))..---- ( -29.80) >DroAna_CAF1 120456 110 - 1 CC-----ACACCCAUCGCAGCUGUCUGCGCAUAUUUGGUGUGCGGUUACAUUUGAUUACGUGCCAAAAGUGCUCGCCCAGCCCGGGCUGCCCCGGGCCGCCCCCU---CGGCGACGCC ..-----.........((((....))))((((.(((((..((..((((....))))..))..))))).))))..((...(((((((....)))))))((((....---.))))..)). ( -44.40) >DroPer_CAF1 124603 110 - 1 UCUCGCCUUUGC---CGCAGCUGUCUGCGCAUAUUUGGUGUGCGGUUACAUUUGAUUACAUGCCAAAAGUGCUCGCCCCCCUCUCGCCACCC--GCACGCCUCCU---GGGCCACACC ..........((---(.(((..((.(((((((.(((((((((..((((....))))..))))))))).))))..((.........)).....--))).))...))---))))...... ( -30.40) >consensus CC_____GUUGCCAUCGCAGCUGUCUGCGCAUAUUUGGUGUGCGGUUACAUUUGAUUACAUGCCAAAAGUGCUCGCCCAGC________________CGCCCCCUGUUCAGCCA____ ................((((....))))((((.(((((..((..((((....))))..))..))))).)))).............................................. (-23.22 = -23.08 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:43 2006