Locus 8396

Sequence ID	3L_DroMel_CAF1
Location	22,076,044 – 22,076,135
Length	91
Max. P	0.769601

overview

Window 9

Location	22,076,044 – 22,076,135
Length	91
Sequences	5
Columns	91
Reading direction	forward
Mean pairwise identity	96.48
Mean single sequence MFE	-30.04
Consensus MFE	-25.78
Energy contribution	-25.82
Covariance contribution	0.04
Combinations/Pair	1.04
Mean z-score	-1.51
Structure conservation index	0.86
SVM decision value	0.53
SVM RNA-class probability	0.769601
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22076044 91 + 23771897
UUACUGGGAUACUGAGAUACACAGAUACUUAGAAAGAAGACUGCCGAGGCAGCGGCAACUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG
...(..((((((((((((......)).))))).........((((((((..(((.(..........).)))..))))).))))))))..). ( -25.60)
>DroSec_CAF1 61502 91 + 1
UUACUGGGAUACUGAGAUACACGGAUACUCAGAAACAAGACUGCCGAGGCAGCGGCAGCUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG
...(..(((((.((...((((.((((((.(.......((.((((((......)))))))).......).)))))).)))))))))))..). ( -33.84)
>DroSim_CAF1 67384 91 + 1
UUACUGGGAUACUGAGAUACACGGAUACUCAGAAACAAGACUGCCGAGGCAGCGGCAGCUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG
...(..(((((.((...((((.((((((.(.......((.((((((......)))))))).......).)))))).)))))))))))..). ( -33.84)
>DroEre_CAF1 61839 91 + 1
UUACUGGGAUACUGAGAUACACGGAUACUCAGAAGCAAGACUGCCGAGGCAGCGGCAACUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG
...(..(((((.((...((((.((((((((((..((....((((....))))..))..)))).......)))))).)))))))))))..). ( -31.71)
>DroYak_CAF1 74848 91 + 1
UUACUGGCAUACUGAGAUACACGGAAACUCAGAAACAAGACUGCCGAGGCAGCGGCAUCUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG
...(..(....(((((...........)))))......(((((((((((..(((.(.((.....))).)))..))))).))).))))..). ( -25.20)
>consensus
UUACUGGGAUACUGAGAUACACGGAUACUCAGAAACAAGACUGCCGAGGCAGCGGCAACUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG
...(..((((((((((...........))))).........((((((((..(((.(..........).)))..))))).))))))))..). (-25.78 = -25.82 +   0.04)

alignment

secondary structure

dotplot

Window 0

Location	22,076,044 – 22,076,135
Length	91
Sequences	5
Columns	91
Reading direction	reverse
Mean pairwise identity	96.48
Mean single sequence MFE	-26.55
Consensus MFE	-23.36
Energy contribution	-23.28
Covariance contribution	-0.08
Combinations/Pair	1.13
Mean z-score	-1.33
Structure conservation index	0.88
SVM decision value	0.27
SVM RNA-class probability	0.661672
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22076044 91 - 23771897
CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGUUGCCGCUGCCUCGGCAGUCUUCUUUCUAAGUAUCUGUGUAUCUCAGUAUCCCAGUAA
.....((.(((((((..(((((((..(.....)..)).(((((....)))))...........)))))))))))).))............. ( -22.10)
>DroSec_CAF1 61502 91 - 1
CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGCUGCCGCUGCCUCGGCAGUCUUGUUUCUGAGUAUCCGUGUAUCUCAGUAUCCCAGUAA
.....((.((((((..((((((........(((((((((......)))))))..)).......)))))))))))).))............. ( -26.36)
>DroSim_CAF1 67384 91 - 1
CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGCUGCCGCUGCCUCGGCAGUCUUGUUUCUGAGUAUCCGUGUAUCUCAGUAUCCCAGUAA
.....((.((((((..((((((........(((((((((......)))))))..)).......)))))))))))).))............. ( -26.36)
>DroEre_CAF1 61839 91 - 1
CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGUUGCCGCUGCCUCGGCAGUCUUGCUUCUGAGUAUCCGUGUAUCUCAGUAUCCCAGUAA
.....((.((((((..((((((.......((((..((.(((((....)))))...))..)))))))))))))))).))............. ( -27.11)
>DroYak_CAF1 74848 91 - 1
CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGAUGCCGCUGCCUCGGCAGUCUUGUUUCUGAGUUUCCGUGUAUCUCAGUAUGCCAGUAA
....((.(((((....((((((((.....(((((.((.(((((....)))))...)).)))))......))))))))..)))))))..... ( -30.80)
>consensus
CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGCUGCCGCUGCCUCGGCAGUCUUGUUUCUGAGUAUCCGUGUAUCUCAGUAUCCCAGUAA
.....((.((((((..((((((......(..((((((((......)))))).))..)......)))))))))))).))............. (-23.36 = -23.28 +  -0.08)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:17 2006