| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,059,093 – 22,059,189 |
| Length | 96 |
| Max. P | 0.527496 |
| Location | 22,059,093 – 22,059,189 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.86 |
| Mean single sequence MFE | -12.92 |
| Consensus MFE | -8.85 |
| Energy contribution | -8.60 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22059093 96 + 23771897 UGGUUUAAUUAAAACAUUGUUACUUCAUUGUGAAAAUGCGCAAAGUGUAAUUAUAUAACAUUUUC-CAACCACGCACCCACCCAC--CCCCUUGCACAU (((((.........((((.((((......)))).)))).(.(((((((.........))))))).-)))))).(((.........--.....))).... ( -12.14) >DroVir_CAF1 52989 79 + 1 CGGUUUAAUUAAAACAUUGUUACUUCAUUGUGAAAAUGCGCAAAGUGUAAUUAUAUAAAAUUUGCACAGCCACAGACAG-------------------- .((((.........((((.((((......)))).)))).(((((.((((....))))...)))))..))))........-------------------- ( -13.90) >DroGri_CAF1 45538 75 + 1 UGGUUUAAUUAAAACAUUGUUACUUCAUUGUGAAAAUGCGCAAAGUGUAAUUAUAUAAAAUUUGCACAGCCACA----G-------------------- (((((.........((((.((((......)))).)))).(((((.((((....))))...)))))..)))))..----.-------------------- ( -14.00) >DroEre_CAF1 44228 90 + 1 UGGUUUAAUUAAAACAUUGUUACUUCAUUGUGAAAAUGCGCAAAGUGUAAUUAUAUAACAUUUCC-CAACCACGCACCCACAC--------UCCUACAU (((((.........((((.((((......)))).)))).(..((((((.........))))))..-))))))...........--------........ ( -10.10) >DroMoj_CAF1 63196 75 + 1 UGGUUUAAUUAAAACAUUGUUACUUCAUUGUGAAAAUGCGCAAAGUGUAAUUAUAUAAAAAUUGCACAGCCACA----G-------------------- (((((.........((((.((((......)))).))))......((((((((.......)))))))))))))..----.-------------------- ( -15.40) >DroAna_CAF1 64746 87 + 1 UGGUUUAAUUAAAACAUUGUUACUUCAUUGUGAAAAUGCGCAAAGUGUAAUUAUAUAACAUUUUCACAACCACGCACCCUCGCUCUC------------ (((((.........((((.((((......)))).)))).(.(((((((.........))))))))..))))).((......))....------------ ( -12.00) >consensus UGGUUUAAUUAAAACAUUGUUACUUCAUUGUGAAAAUGCGCAAAGUGUAAUUAUAUAAAAUUUGCACAACCACACACCC____________________ .((((.............(((((..(.(((((......))))).).)))))................))))............................ ( -8.85 = -8.60 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:09 2006