Locus 8383

Sequence ID 3L_DroMel_CAF1
Location 22,029,182 – 22,029,287
Length 105
Max. P 0.645852
window13710

overview

Window 0

Location 22,029,182 – 22,029,287
Length 105
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -21.58
Consensus MFE -16.69
Energy contribution -18.00
Covariance contribution 1.31
Combinations/Pair 1.11
Mean z-score -1.85
Structure conservation index 0.77
SVM decision value 0.23
SVM RNA-class probability 0.645852
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22029182 105 - 23771897
UAUAGGAAAGAGCUCAAACUCACUACUUCAACUGCAAUAAUUGUGCAAUUGAUGGCUCAAUGACUUUCUAAUUCACAAUUAAUGUGUUAAGAUUCCUACAAUGGU
..((((((.(((......)))....(((.(((.(((.((((((((.((((((.(((.....).)).)).)))))))))))).))))))))).))))))....... ( -23.30)
>DroSec_CAF1 19926 103 - 1
--UGGGAAAGAGCUCAAACUCACUACUUCAACUACAAUAAUUGUGCAAUUGAUGGCUCAAUGACUUUCUAAUUCACAAUUAAUGUGUUAAGAUUCCUACAAUGGC
--((((((.(((......)))....(((.(((.(((.((((((((.((((((.(((.....).)).)).)))))))))))).))))))))).))))))....... ( -23.10)
>DroSim_CAF1 24668 105 - 1
UAUGGGAAAGAGCUCAAACUCACUACUUCAACUGCAAUAAUUGUGCAAUUGAUGGCUCAAUGACUUUCUAAUUCACAAUUAAUGUGUUAAGAUUCCUACAAUGGU
..((((((.(((......)))....(((.(((.(((.((((((((.((((((.(((.....).)).)).)))))))))))).))))))))).))))))....... ( -23.00)
>DroEre_CAF1 20905 105 - 1
UGCCUUAAAGAGCUCAAACUCACUACUUUGAGUGCAACAAUUGUGCAACUGAUAGCUCAAUGACUUUCUAAUUCACAAUUAAUGUGUUAAAAUUCCUACAAUGGU
.(((.....(((((...(((((......)))))(((.(....)))).......)))))...............((((.....))))................))) ( -16.90)
>consensus
UAUGGGAAAGAGCUCAAACUCACUACUUCAACUGCAAUAAUUGUGCAAUUGAUGGCUCAAUGACUUUCUAAUUCACAAUUAAUGUGUUAAGAUUCCUACAAUGGU
..((((((.(((......)))....(((.(((.(((.((((((((.((((((.(((.....).)).)).)))))))))))).))))))))).))))))....... (-16.69 = -18.00 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:59 2006