Locus 8380

Sequence ID 3L_DroMel_CAF1
Location 22,020,432 – 22,020,526
Length 94
Max. P 0.552995
window13707

overview

Window 7

Location 22,020,432 – 22,020,526
Length 94
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 92.02
Mean single sequence MFE -19.78
Consensus MFE -16.45
Energy contribution -16.61
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.30
Structure conservation index 0.83
SVM decision value 0.04
SVM RNA-class probability 0.552995
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22020432 94 + 23771897
CACUCAGGUUUCUCUGUUUGUUCCGCCUUGCAACCGAGAACGACCUUGGCAACAACAACACCAAC---AACAAUGACGCCAACAUGAGCUGAUCCAA
((((((((((((((.(((.((........))))).))))..))))(((((..((...........---.....))..)))))..)))).))...... ( -18.79)
>DroSec_CAF1 11172 94 + 1
CACUCAGGUUUCUCUGUUUGUUCCGCCUUGCAGCCGAGAACGACCUUGGCAACAACAACACCAAC---AACAAUGACGCCAACAUGAGCUGAUCCAA
(((((((((.((..((((.(((..((...)).((((((......))))))............)))---))))..)).)))....)))).))...... ( -20.70)
>DroSim_CAF1 12240 94 + 1
CACUCAGGUUUCUCUGUUUGUUCCGCCUCGCAGCCGAGAACGACCUUGGCAACAACAACACCAAC---AACAAUGACGCCAACAUGAGCUGAUCCAA
(((((((((.((..((((.(((..((...)).((((((......))))))............)))---))))..)).)))....)))).))...... ( -20.70)
>DroEre_CAF1 12519 85 + 1
CACUCAGGUUUCUCUGUUGGUUCCGCCUUGCAGCCGAGAACGACCUUGGCAACAACAA------------CAAUGACUCCAACAUGAGCUGAUCCAA
...((((....(((((((((.((.((...)).((((((......))))))........------------....))..)))))).)))))))..... ( -22.30)
>DroYak_CAF1 12374 97 + 1
CACUCAGGUUUCUCUGUUAGUUCCGCCUUGCAACCAAGAACGACCUUGGCAACAACAACACCGACAAGAACAAUGACGCCAACAUGAGCUGAUCCAA
(((((((((.((..((((.(((.....(((...(((((......)))))...))).......)))...))))..)).)))....)))).))...... ( -16.40)
>consensus
CACUCAGGUUUCUCUGUUUGUUCCGCCUUGCAGCCGAGAACGACCUUGGCAACAACAACACCAAC___AACAAUGACGCCAACAUGAGCUGAUCCAA
((((((((((((((.(((.((........))))).))))..))))(((((..((...................))..)))))..)))).))...... (-16.45 = -16.61 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:56 2006