| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,004,484 – 22,004,596 |
| Length | 112 |
| Max. P | 0.500000 |
| Location | 22,004,484 – 22,004,596 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 94.25 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -19.30 |
| Energy contribution | -19.63 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22004484 112 + 23771897 CACUCGCGUAACGGGUAU----ACAAUUACACAUUUUUGGCUGACUCACAAUGAGAUUGCAGUUAACAAUAAAUCUCUAUCUUUAUAUACAUAUGUAUGUAUAUAGACGAUUUAAA .(((((.....)))))..----..............(((((((.(((.....)))....)))))))...(((((((((((...(((((((....))))))).))))).)))))).. ( -25.50) >DroSec_CAF1 6356 116 + 1 CACUCGCGUAACGGGUAUACAUACAAUUACACAUUUUUGGCUGACUCACAAUGAGAUUGCAGUUAAGAAUAAAUCUCAAUCUUUAUAUACAUAUGUAUGUAUGGAGACCACUUAAA .(((((.....)))))................(((((((((((.(((.....)))....)))))))))))...((((......(((((((....)))))))..))))......... ( -24.70) >DroSim_CAF1 5065 116 + 1 CACUCGCGUAACGGGUAUACAUACAAUUACACAUUUUUGGCUGACUCACAAUGAGAUUGCAGUUAACAAUAAAUCUCAAUCUUUAUAUACAUAUGUAUGUAUGGAGACCACUUAAA .(((((.....)))))(((((((((...........(((((((.(((.....)))....)))))))..(((((........))))).......)))))))))(....)........ ( -21.80) >consensus CACUCGCGUAACGGGUAUACAUACAAUUACACAUUUUUGGCUGACUCACAAUGAGAUUGCAGUUAACAAUAAAUCUCAAUCUUUAUAUACAUAUGUAUGUAUGGAGACCACUUAAA .(((((.....)))))................(((.(((((((.(((.....)))....))))))).)))...((((......(((((((....)))))))..))))......... (-19.30 = -19.63 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:48 2006