| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,969,253 – 21,969,350 |
| Length | 97 |
| Max. P | 0.727923 |
| Location | 21,969,253 – 21,969,350 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 74.74 |
| Mean single sequence MFE | -25.48 |
| Consensus MFE | -12.59 |
| Energy contribution | -13.43 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.727923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21969253 97 + 23771897 GGCAUAUUCAAAUGAAAUGUGCCACAAAAUGUUUACGGUCAUUGCAACUCAAAGCGAC------AGACCAUAGACGAGGUGCAAGGUGUUGUGGCAGUUGCAG (((((((((....).))))))))......((((((.((((.((((........)))).------.)))).))))))...(((((..(((....))).))))). ( -27.90) >DroSec_CAF1 95495 79 + 1 GGCAUAUUCAAAUGAAGUGUGCCACAAAAUGUUUACGGCCAUUGCAACUCAAAGCGAC------------------------AAGGUGUUGUGGCAGUGGCAG (((((((((....).))))))))..............((((((((........(((((------------------------.....))))).)))))))).. ( -27.40) >DroSim_CAF1 95386 79 + 1 GGCAUAUUCAAAUGAAAUGUGCCACAAAAUGUUUACGGCCAUUGCAACUCAAAGCGAC------------------------AAGGUGUUGUGGCAGUGGCAG (((((((((....).))))))))..............((((((((........(((((------------------------.....))))).)))))))).. ( -27.40) >DroEre_CAF1 91642 97 + 1 GGCAUAUUCCAAUGAAAUGUGCCACAAAAUGUUUACGGCCAUUGAAGCUCAAAGCGAG------AGACCAUAGACGACGUGCAAAGUGUUGUGGUAGUGACAG ((((((((.......))))))))......((((.((.(((((....(((....(((..------.(........)..)))....)))...))))).)))))). ( -21.90) >DroYak_CAF1 112484 97 + 1 GGCAUAUUCCAAUGAAAUGUGCCACAAAAUGUUUACGGCCAUUGAAGCUCAAAGCAAG------AGACCAUAGACGAGGUGCAAGGUGCUGUGGUAGUGGUUG ((((((((.......))))))))............((((((((...((.....))...------..(((((((((..........)).))))))))))))))) ( -27.30) >DroAna_CAF1 100023 100 + 1 GGCAUAAUCAAAUGAAAUGUCAAACAUAAUAUUUGUGGCAAUCCUCGUUAAAAGCCACCCACUGCGAACAUAGUC---GUGCAACGUGUAGUGGCAGUAGCAC .((.....((((((..(((.....)))..))))))..)).......((((...(((((.((((((((......))---)))....)))..)))))..)))).. ( -21.00) >consensus GGCAUAUUCAAAUGAAAUGUGCCACAAAAUGUUUACGGCCAUUGCAACUCAAAGCGAC______AGACCAUAGAC___GUGCAAGGUGUUGUGGCAGUGGCAG (((((((((....).))))))))..............((((((((.((.....((..............................))...)).)))))))).. (-12.59 = -13.43 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:35 2006