Locus 836

Sequence ID 3L_DroMel_CAF1
Location 2,534,550 – 2,534,653
Length 103
Max. P 0.796538
window1287

overview

Window 7

Location 2,534,550 – 2,534,653
Length 103
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 75.51
Mean single sequence MFE -27.73
Consensus MFE -16.99
Energy contribution -16.38
Covariance contribution -0.61
Combinations/Pair 1.20
Mean z-score -1.55
Structure conservation index 0.61
SVM decision value 0.60
SVM RNA-class probability 0.796538
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2534550 103 - 23771897
AAAGCGAUAUUAGCUAAGCC-UAAUGUGGCCAUUUGUGGCUUGAUUUUUAUUUGAUUGUUACA---GGGUUCACUGAACCC-----------AGGUUGCAGUUCAAUUAGUCGGUCGA
....((((....(((((...-...((..(((...((((((..((((.......))))))))))---((((((...))))))-----------.)))..))......)))))..)))). ( -30.60)
>DroPse_CAF1 195884 108 - 1
AAAGCGAUAUUAGCGAGACUUUAAUGGGACCAUUUGCGGUUUAGUUUUAAUUUGAUCUUUGCGCAUAGGUUCAAUGAACCCCCAACCCCCCUUGAUUGCAGCUAAUUU----------
........((((((..(...((((.(((......((((.(..((.((......)).))..)))))..(((((...))))).......))).))))...).))))))..---------- ( -19.90)
>DroSec_CAF1 157389 103 - 1
AAAGCGAUAUUAGCUAAGCC-UAAUGUGGCCAUUUGUGGCUUCAUUUUUAUUUGAUCUUUACA---GGGUUCACUGAACCC-----------AGAUUGCAGUUCAAUUAGUCGCUCGA
..(((((((((((((..((.-.((((.(((((....))))).)))).......(((((.....---((((((...))))))-----------))))))))))).)))..))))))... ( -26.70)
>DroSim_CAF1 155229 103 - 1
AAAGCGAUAUUAGCUAAGCC-UAAUGUGGCCAUUUGUGGCUUGAUUUUUAUUUGAUCUUUACA---GGGUUCACUGAACCC-----------AGGUUGCAGUUCAAUUAGUCGCUCGA
..(((((((((((((.((((-(..((((((((....))))..((((.......))))..))))---((((((...))))))-----------)))))..)))).)))..))))))... ( -30.80)
>DroYak_CAF1 157676 103 - 1
AAAGCGAUAUUAGCUAAGCC-UAAUGCGGCCAUUUGGGGCUUGAUUUUUAUUGGCUGUUUACG---GGGUUCACUGAACCC-----------AGAUUGCAGUUAGCUUUGUCGCUCAA
..(((((((..(((((((((-(((((....))))..)))))))........(((((((.....---((((((...))))))-----------.....)))))))))).)))))))... ( -37.00)
>DroPer_CAF1 194808 104 - 1
AAAGCGAUAUUAGCGAGACUUUAAUGGGACCAUUUGCGGUUUAGUUUUAAUUUGAUCUUUGCGCAUAGGUUCAAUGAACCCC----CCCCCUUGAGUGCAGCUAAUUU----------
........((((((...((((....(((......((((.(..((.((......)).))..)))))..(((((...)))))..----..)))..))))...))))))..---------- ( -21.40)
>consensus
AAAGCGAUAUUAGCUAAGCC_UAAUGUGGCCAUUUGUGGCUUGAUUUUUAUUUGAUCUUUACA___GGGUUCACUGAACCC___________AGAUUGCAGUUAAAUUAGUCGCUCGA
...(((((.......(((((..((((....))))...)))))........................((((((...)))))).............)))))................... (-16.99 = -16.38 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:23 2006