Locus 8359

Sequence ID 3L_DroMel_CAF1
Location 21,943,411 – 21,943,505
Length 94
Max. P 0.964737
window13674

overview

Window 4

Location 21,943,411 – 21,943,505
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 92.48
Mean single sequence MFE -34.90
Consensus MFE -30.05
Energy contribution -30.33
Covariance contribution 0.28
Combinations/Pair 1.17
Mean z-score -2.34
Structure conservation index 0.86
SVM decision value 1.57
SVM RNA-class probability 0.964737
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21943411 94 - 23771897
AACAUUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCUGGCCGGCCACCUGGGGAAACCCGGAACGCGACUUUUGUCGGUCC
..........(((.......((((((.((((....(((........))).)))).)))..(((((....)))))))).((((....))))))). ( -37.50)
>DroSec_CAF1 65037 94 - 1
AACAAUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCUGGCCGGCCACCUGGGGAAACCCGGAACGCGACUUUUGUCCGUCC
........((((.(((...(((((((.((((....(((........))).)))).)))..(((((....))))).....))))..))))))).. ( -35.90)
>DroSim_CAF1 69875 94 - 1
AACAAUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCUGGCCGGCCACCUGGGGAAACCCGGAACGCGACUUUUGUCCGUCC
........((((.(((...(((((((.((((....(((........))).)))).)))..(((((....))))).....))))..))))))).. ( -35.90)
>DroEre_CAF1 65145 94 - 1
AACAUUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCGGGCCGGCCACCUGGGGAAACCCAGAGCGCGACUUUUGUCGGUCC
...........((.........((((.(((((...(((........)))))))).)))).(((((....))))).)).((((....)))).... ( -39.90)
>DroYak_CAF1 80607 88 - 1
AACAUUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCUGGCCGGCCACCUGGGGAAACCCGGAACGCAACUUUUGU------
.(((.......((.........((((.((((....(((........))).)))).)))).(((((....)))))...))......)))------ ( -33.02)
>DroAna_CAF1 72934 92 - 1
AACAUUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGACUUUAAUUUGCCUGGCCAGCCACCUGGGGAAAUGCGAAACGCGACUU--GCCAGUCC
.........(((((..(((((.((((.(((.(((.(.(........)))))))).)))).)))))....((((...))))...)--)))).... ( -27.20)
>consensus
AACAUUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCUGGCCGGCCACCUGGGGAAACCCGGAACGCGACUUUUGUCCGUCC
..........((((.....(((((((.((((....(((........))).)))).)))..(((((....))))).....))))..))))..... (-30.05 = -30.33 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:25 2006