Locus 8358

Sequence ID 3L_DroMel_CAF1
Location 21,938,514 – 21,938,619
Length 105
Max. P 0.943988
window13673

overview

Window 3

Location 21,938,514 – 21,938,619
Length 105
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 77.81
Mean single sequence MFE -43.10
Consensus MFE -22.00
Energy contribution -23.28
Covariance contribution 1.28
Combinations/Pair 1.28
Mean z-score -2.50
Structure conservation index 0.51
SVM decision value 1.34
SVM RNA-class probability 0.943988
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21938514 105 - 23771897
UGCCCCGGUCCUUGGAGUAUGCUCAACCCGGAUAAGCCGG--CCUGUCUGAGCUGACCCGACCUGCCCUCAGGUGACCCUCACCUGGACAACUGGGCAACUGGGCAA
(((((.((((...((.((..(((((((((((.....))))--...)).)))))..))))))))((((((((((((.....)))))))......)))))...))))). ( -46.10)
>DroSec_CAF1 59771 105 - 1
UGCCCCGGUCCUUGGGGUAUGCUCAGCCCGGAUAAGCCGG--CCUGUCUGAGCUGACCCGACCUGCCCUCAGGUGACCCUCACCUGGACAACUGGGCAACUGGGCAA
(((((.((((....((((..(((((((((((.....))))--...).))))))..))))))))((((((((((((.....)))))))......)))))...))))). ( -51.90)
>DroSim_CAF1 64165 105 - 1
UGCCCCGGUCCUUGGGGUAUGCUCAGCCCGGAUAAGCCGG--CCUGUCUGAGCUGACCCGACCUGCCCUCAGGUGACCCUCACCUGGACAACUGGGCAACUGGGCAA
(((((.((((....((((..(((((((((((.....))))--...).))))))..))))))))((((((((((((.....)))))))......)))))...))))). ( -51.90)
>DroEre_CAF1 60416 97 - 1
UGACCCGCUCCUUGGGGUAUCCUUAGUCCGGAUAAGCCAC--CCUGUCUGAGCUGACCCGACCUGCCCCCAGGUGACCCUCACCUG--------GGCAACUGGGCAA
((.(((((...(((((......((((..((((((......--..))))))..)))))))))...)).((((((((.....))))))--------)).....))))). ( -37.80)
>DroYak_CAF1 70298 97 - 1
UGACCGGUACCUUGGGGUAUACUUAGCCCGGAUAUGCCAG--CCUGUCUGAGCUGACCCGACCUGCCCUCAGGUGACCCUUACCUG--------GGCAACUGGGCAA
((.(((((......((((....(((((.((((((.(....--).)))))).)))))....))))((((..((((((...)))))))--------))).))))).)). ( -36.10)
>DroAna_CAF1 68681 98 - 1
UGGGCCUGUCCCGGGGGUCUUUUUAGGUGGGCUAAGCUAGAGGUUGGAUAAAAUGACCAGA---GCUCACAGGUCACCCUUUC--GGCCAUUCAGGCCA----GCAA
..((((((..(((..((........(((((.((.((((...(((((.......)))))..)---)))...)).)))))))..)--)).....)))))).----.... ( -34.80)
>consensus
UGCCCCGGUCCUUGGGGUAUGCUCAGCCCGGAUAAGCCAG__CCUGUCUGAGCUGACCCGACCUGCCCUCAGGUGACCCUCACCUGGACAACUGGGCAACUGGGCAA
..............((((..((((((.(.((...........)).).))))))..))))....(((((.((((((.....))))))........(....).))))). (-22.00 = -23.28 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:24 2006