Locus 8355

Sequence ID 3L_DroMel_CAF1
Location 21,926,864 – 21,926,959
Length 95
Max. P 0.591344
window13670

overview

Window 0

Location 21,926,864 – 21,926,959
Length 95
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 83.23
Mean single sequence MFE -22.11
Consensus MFE -15.10
Energy contribution -16.49
Covariance contribution 1.39
Combinations/Pair 1.20
Mean z-score -1.93
Structure conservation index 0.68
SVM decision value 0.12
SVM RNA-class probability 0.591344
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21926864 95 + 23771897
GAU-----UGGUCGCGGCUUACGGCUCGCUUAAAAGUUGUUAUUAAUAGCCAGCUAAAAAUAAAAUUGUAAAUCAAGUUGUAAGCUGCAAAAUUAAUUGC
(((-----((((.(((((((((((((........((((.(((((..(((....)))..)))))))))........)))))))))))))...))))))).. ( -24.59)
>DroSec_CAF1 47811 95 + 1
GAU-----UGGUCGCGGCUUACGGCUCGCUUAAAAGUUGUUAUUAAUAGCCAGCUGAAAAUAAAAUUGUAAAUCAAGUUGUAAGCUGCAAAAUUAAUUGC
(((-----((((.(((((((((((((........((((.(((((..(((....)))..)))))))))........)))))))))))))...))))))).. ( -24.29)
>DroSim_CAF1 48133 95 + 1
GAU-----UGGUCGCGGCUUACGGCUCGCUUAAAAGUUGUUAUUAAUAGCCAGCUGAAAAUAAAAUUGUAAAUCAAGUUGUAAGCUGCAAAAUUAAUUGU
(((-----((((.(((((((((((((........((((.(((((..(((....)))..)))))))))........)))))))))))))...))))))).. ( -24.29)
>DroEre_CAF1 48579 93 + 1
GAU-----UGGUU-CAGCUUACGGCUCGCUUAAAAGUUGUUAUUAAUAGCCCGCUGCAAAUAAAAUUGUAAAUCAAGUUGUAAGCUGGA-AAUUAAUUGC
(((-----((.((-((((((((((((.........(((((.....)))))....(((((......))))).....))))))))))))))-...))))).. ( -23.20)
>DroYak_CAF1 55713 94 + 1
GAU-----GGGUU-CUGCUUACGGCUCGCUUAAAAGUUAUUAUUAAUAGCCCGCUGCAAAUAAAAUUGUAAAUCAAAUUGUAAGCUGAAAAAUUAAUUGC
(((-----...((-(.((((((((((....(((......))).....))))...(((((......))))).........)))))).)))..)))...... ( -16.20)
>DroAna_CAF1 55144 94 + 1
GAUUAAAUUGAACGAGGCGGACG---CAGUUGAAAAGUUUGAUUAAUAGCCAAUGGCAA---AAAGUUCAAAUCAAAUUGUUCGCUGCGAAAUUAAUUGC
.....((((((.((.((((((((---...((((....(((((......(((...)))..---.....)))))))))..)))))))).))...)))))).. ( -20.12)
>consensus
GAU_____UGGUCGCGGCUUACGGCUCGCUUAAAAGUUGUUAUUAAUAGCCAGCUGAAAAUAAAAUUGUAAAUCAAGUUGUAAGCUGCAAAAUUAAUUGC
.............(((((((((((((........((((.(((((..(((....)))..)))))))))........)))))))))))))............ (-15.10 = -16.49 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:21 2006