Locus 8321

Sequence ID	3L_DroMel_CAF1
Location	21,798,024 – 21,798,114
Length	90
Max. P	0.667119

overview

Window 0

Location	21,798,024 – 21,798,114
Length	90
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	69.57
Mean single sequence MFE	-15.30
Consensus MFE	-6.24
Energy contribution	-7.20
Covariance contribution	0.96
Combinations/Pair	1.20
Mean z-score	-1.77
Structure conservation index	0.41
SVM decision value	0.28
SVM RNA-class probability	0.667119
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21798024 90 + 23771897
ACAUAAUGUGCCAUAACAGUUUAAUAAACUGUUAUAAUUAAAAUUUCUAAUAGAAAUCUGACUGC---GCGGUAGCGUUAUGACAAAAUGAUG
.((((((((((((((((((((.....))))))))).......(((((.....)))))........---..)))).)))))))........... ( -21.70)
>DroSec_CAF1 17941 80 + 1
ACAUAAUGUGCCAUAGCAGUUUAAUAAACUGUUAUAAUUAAAAUUGCUAAAAGAAAUCUGAUUGCUAAGGGGUAGCGGUA-------------
........(((((((((((((.....)))))))))..........((((.......(((........)))..))))))))------------- ( -15.70)
>DroSim_CAF1 23386 80 + 1
ACAUAAUGUGCCAUAGCAGUUUAAUAAACUGUUAUAAUUAAAAUUGCUAAUAGAAAUCUGAUUGCUAAGGGGUAGCGGUA-------------
........((((.((((((((.......((((((((((....)))).))))))......))))))))...))))......------------- ( -15.92)
>DroEre_CAF1 24499 74 + 1
AC----------------GUUUAAAGAACUGUUAUAAUUAAAAUAGCUAUUAGAAAUUGGAUUGCUAGG-GGUAGAAGAU-UUCAAAA-GAUA
..----------------............(((((.......))))).....((((((...((((....-.))))..)))-)))....-.... (  -7.50)
>DroYak_CAF1 33922 78 + 1
UCAUGAUGUGAGAUAGCAGUUUAGUAAACUGUUAUAAUUAAAAUAGCAAAUACAAAUCGAUUUGCUAAG-GGUAGAAGA--------------
...((((.....(((((((((.....))))))))).))))...((((((((........))))))))..-.........-------------- ( -15.70)
>consensus
ACAUAAUGUGCCAUAGCAGUUUAAUAAACUGUUAUAAUUAAAAUUGCUAAUAGAAAUCUGAUUGCUAAG_GGUAGCGGUA_____________
............((((((((((...))))))))))..........................(((((....))))).................. ( -6.24 =  -7.20 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:33 2006