Locus 8316

Sequence ID 3L_DroMel_CAF1
Location 21,772,009 – 21,772,116
Length 107
Max. P 0.563039
window13610

overview

Window 0

Location 21,772,009 – 21,772,116
Length 107
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 85.34
Mean single sequence MFE -35.73
Consensus MFE -25.97
Energy contribution -26.28
Covariance contribution 0.31
Combinations/Pair 1.22
Mean z-score -2.37
Structure conservation index 0.73
SVM decision value 0.06
SVM RNA-class probability 0.563039
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21772009 107 + 23771897
CAGCGUUGCGAAAAC-AUCGCAAUCUGAUGCUUUUUAAACUUACCUGUGGCCAAAGGGAUUCCGGCACAUACAUUCGCGAGCAGGCGGAACACUUCUGGCCGCAGUAC
(((.(((((((....-.)))))))))).................(((((((((.(((..(((((.(.................).)))))..))).)))))))))... ( -38.03)
>DroSec_CAF1 683 107 + 1
CAGCGUUGCGAAAAC-AUUGCAAUCUGAUGCCUUUCGAACUUACCUGUGGCCACAGGGAUUCCGGCACAUACAUGCGCGAGCAGGCGGAACACUUCUGGCCGCAGUAC
(((.(((((((....-.)))))))))).................(((((((((.(((..(((((.(.......(((....)))).)))))..))).)))))))))... ( -41.01)
>DroSim_CAF1 683 107 + 1
CAGCGUUGCGAAAAC-AUCGCAAUCUGAUGCCUUUUGAACUUACCUGUGGCCACAGGGAUUCCGGCACAUACAUGCGCGAGCAGGCGGAACACUUUUGGCCGCAGUAC
(((.(((((((....-.)))))))))).................(((((((((.(((..(((((.(.......(((....)))).)))))..))).)))))))))... ( -43.11)
>DroEre_CAF1 681 104 + 1
CAGCGUUGCGAAAAC-AUCGCA---UGAUGCCUUUUGAACCUACCUGUGGCCACAGGGAUUCCGGCACAUACAUGCGCGAGCAGGCUGAACACUUCUGGCCGCAGUAC
..(((((((((....-.)))))---..)))).............(((((((((.(((..(((.(((.......(((....))).))))))..))).)))))))))... ( -37.80)
>DroWil_CAF1 2388 108 + 1
UAAUAUUUCAAAUUCUAUUGUAAUCACACUCUAAUCACACACACCUCUGGCCACAAAGAUUCUGGGACAUACAUACGCGAACAGGCCGAACAUUUUUGGCCACAAUAC
...............((((((.......(((.((((.......((...)).......))))..))).................(((((((....))))))))))))). ( -15.94)
>DroYak_CAF1 682 107 + 1
CAGCGUUACGAAAAC-AUCGCAAUGUGAUGCCUUUUGAACCUACCUGUGGCCACAGGGAUUCAGGCACAUACAUGCGCGAGCAGGCGGAACACUUCUGGCCGCAGUAC
.((.(((.(((((.(-(((((...))))))..))))))))))..(((((((((.(((..(((..((.......(((....))).)).)))..))).)))))))))... ( -38.50)
>consensus
CAGCGUUGCGAAAAC_AUCGCAAUCUGAUGCCUUUUGAACUUACCUGUGGCCACAGGGAUUCCGGCACAUACAUGCGCGAGCAGGCGGAACACUUCUGGCCGCAGUAC
....(((((((......)))))))....................(((((((((.(((..(((..(((......)))((......)).)))..))).)))))))))... (-25.97 = -26.28 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:24 2006