Locus 8307

Sequence ID 3L_DroMel_CAF1
Location 21,750,592 – 21,750,712
Length 120
Max. P 0.500000
window13599

overview

Window 9

Location 21,750,592 – 21,750,712
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.78
Mean single sequence MFE -50.07
Consensus MFE -43.06
Energy contribution -43.40
Covariance contribution 0.34
Combinations/Pair 1.05
Mean z-score -1.79
Structure conservation index 0.86
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21750592 120 - 23771897
GGUGGAUGAUGGUGUUGCGAUCUGGCCACCGAGGACGCUGGUGACACCAUCUUCGUUGGGAUCUCCCGCCGAAGAUGCUCCUGAAUCGCUGGGAGUGUUGCUGAGGCGGGAAUCGAGCUU
(((((..(((.(.....).)))...)))))(((((.(.((....)).).)))))(((.((...(((((((...(((((((((........))))))))).....))))))).)).))).. ( -51.60)
>DroSim_CAF1 38452 120 - 1
GGUGGAUGAUGGUGUUGCGAUCUGGCCACUGAGGACGCUGGUUGCACCAUCUUCAUUGGGAUCUCCCGCCGAAGAUGCUCCUGAAUCGCUGGGAGUGUUGCUAAGGCGGGACUCGAGCUU
((((((.((((((((.(((.(((........))).))).....))))))))))))))(((...(((((((...(((((((((........))))))))).....))))))))))...... ( -48.90)
>DroEre_CAF1 18188 120 - 1
GGUUGAGGAUGGUGUUGCGAUUUGGCCACUAAAGACGCUGGUGGCCCCAUCUUCGUUGGGAUCUCCCGCAGAAGAUGCUCCUGAAUCGCUGGGAGUGUUGCUGAGGCGGGACUCGAGCUU
....((((((((...........((((((((.......))))))))))))))))(((.(..((((((.(((..(((((((((........))))))))).))).)).))))..).))).. ( -49.70)
>consensus
GGUGGAUGAUGGUGUUGCGAUCUGGCCACUGAGGACGCUGGUGGCACCAUCUUCGUUGGGAUCUCCCGCCGAAGAUGCUCCUGAAUCGCUGGGAGUGUUGCUGAGGCGGGACUCGAGCUU
....((.((((((((.(((.(((........))).))).....)))))))).)).(((((...(((((((...(((((((((........))))))))).....)))))))))))).... (-43.06 = -43.40 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:13 2006