Locus 8300

Sequence ID 3L_DroMel_CAF1
Location 21,745,725 – 21,745,841
Length 116
Max. P 0.658866
window13587

overview

Window 7

Location 21,745,725 – 21,745,841
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.99
Mean single sequence MFE -41.87
Consensus MFE -32.38
Energy contribution -33.02
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.62
Structure conservation index 0.77
SVM decision value 0.26
SVM RNA-class probability 0.658866
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21745725 116 + 23771897
CAGCAUCACGUUGUGGCCACACCACCUGCUGGGCGCAUUUCGCGGAGCAGCUCCCU----GCCACUUGCAUCCCUGGUCCGGAAAAUAUCCAGACUGGGAAAACUCUGGGGAGCACUUAA
..((..(.((.((((.(((((.....)).))).))))...)).)..)).(((((((----((.....)).((((.((((.(((.....))).)))))))).......)))))))...... ( -43.70)
>DroSec_CAF1 30097 120 + 1
CAGCAUCACGUAGUGGCAACACCACCUGCUGGGCGCAUUUCGCGGAUCAGCUCCCUGCCUGCCACUCGCAUCCCUGGUCCGGAAAAUGUCCAGACUGGGAAAGCUCAGAGGAGCACUCAA
.(((....((.(((((((.........(((((.(((.....)))..)))))........)))))))))..((((.((((.(((.....))).))))))))..)))..(((.....))).. ( -42.53)
>DroSim_CAF1 32345 116 + 1
CAGCAUCACGUUGUGGCAACACCACCUGCUGGGCGCAUUUCGCGGAUCAGCUCCCU----GCCACUCGCAUCCCUGGUCCGGAAAAUGUCCAGACUGGGAAAGCUCAGAGGAGCACUCAA
..((........(((....)))..(((.(((((((..((((.((((((((.....(----((.....)))...)))))))))))).))))))).(((((....)))))))).))...... ( -41.40)
>DroEre_CAF1 13803 116 + 1
CAGCAUCACGUUGUGGCAACACCACCUGCUGGGCGCAUUUCUCGGAGCAGCUCCCU----ACCACUCGCAGCCCUGGUCCGGAAAAUGUCCAGACUGGGAAACCUCUGAGGAGCACUUAG
(((((....((.(((....))).)).)))))((.((..(((((((((..((.....----.......))...((..(((.(((.....))).)))..))....))))))))))).))... ( -39.20)
>DroYak_CAF1 90797 116 + 1
CAGCGCCCCAUUGUGGCAGCACCACCUGCUGGGCGCAUUUCGCGGAGCAGCUCCCU----GCCACUCGCAUCCCUGUUCCGGAAAAUGUCCAGACUGGGAAACCUCUGAGGAGCACUUCA
..((((((....((((.....)))).....)))))).((((.((((((((.....(----((.....)))...)))))))))))).....((((..((....)))))).(((....))). ( -42.50)
>consensus
CAGCAUCACGUUGUGGCAACACCACCUGCUGGGCGCAUUUCGCGGAGCAGCUCCCU____GCCACUCGCAUCCCUGGUCCGGAAAAUGUCCAGACUGGGAAACCUCUGAGGAGCACUUAA
(((((....((.(((....))).)).)))))..(((.....))).....(((((......((.....))...(((((((.(((.....))).)))))))..........)))))...... (-32.38 = -33.02 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:01 2006