| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 316,812 – 316,932 |
| Length | 120 |
| Max. P | 0.824321 |
| Location | 316,812 – 316,932 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.50 |
| Mean single sequence MFE | -21.71 |
| Consensus MFE | -16.42 |
| Energy contribution | -16.80 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.824321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 316812 120 - 23771897 UCGCAUUUAUAUUCAUUUCGAUCGGAUCCUCGCAUUAUUGCGAACACUGCGUUCCUUUCUGUAGAUAAAGAUCACUUAUUCAUAUUUUAGGACUACAUAUUCCUAUCAUGAGAUUAUUCU ...................((((.((((.(((((....)))))...(((((........))))).....))))......((((....(((((........)))))..))))))))..... ( -22.20) >DroSim_CAF1 3141 118 - 1 UCGCAUUUAUAUUCAUCUCGAUCG--UCCUCGGAUUUUUGCGAACACUUCGUUCCUUUCUGUAGAUAAAGAUCACUUAUUCAUAUCUUAGGACUACAUAUUCCUAUCAUGAGAUUAUUCU ..............((((((((((--((..((((.....((((.....)))).....))))..)))...))))..............(((((........)))))....)))))...... ( -22.60) >DroEre_CAF1 2708 117 - 1 UCGCACCAAUAUUCGUCUUGAUCG--UCCCCGGACUAUUGCGAACACUUCGUUCCUUUCUGUUCAUAAAGAUCACAUAUUCAUAUUUUAGGACCACCUAUUCCUAUUG-GAGAUUAUUCU .....((((((.......((((((--((....)))......(((((.............))))).....))))).............((((....))))....)))))-).......... ( -20.32) >DroYak_CAF1 2942 118 - 1 UCGCACCAAUAUUCAACUUGAUCG--UCCUCGGAUUAUUGCGAACACUUCGUUCCUUUCUGUAGAUAAAGAUCACUUAUUCAUAUUUUAGGACCACCUAUUCCUAUCAUGAGAUUAUUCU .......((((.((....((((((--((..((((.....((((.....)))).....))))..)))...))))).....((((....(((((........)))))..)))))).)))).. ( -21.70) >consensus UCGCACCAAUAUUCAUCUCGAUCG__UCCUCGGAUUAUUGCGAACACUUCGUUCCUUUCUGUAGAUAAAGAUCACUUAUUCAUAUUUUAGGACCACAUAUUCCUAUCAUGAGAUUAUUCU ..............(((((((((...((..((((.....((((.....)))).....))))..))....))))..............(((((........)))))....)))))...... (-16.42 = -16.80 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:55 2006