Locus 8285

Sequence ID 3L_DroMel_CAF1
Location 21,737,758 – 21,737,878
Length 120
Max. P 0.527256
window13550

overview

Window 0

Location 21,737,758 – 21,737,878
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.83
Mean single sequence MFE -26.74
Consensus MFE -23.42
Energy contribution -23.46
Covariance contribution 0.04
Combinations/Pair 1.09
Mean z-score -1.28
Structure conservation index 0.88
SVM decision value -0.01
SVM RNA-class probability 0.527256
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21737758 120 - 23771897
UUUUCUUUGCUGUUUUGCUCUUUCCGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGAGGAACUUUCCUUGGAGCAGAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC
......(((((((((((((((.......((.((((.(((.(.((((.....)))))))).)))).))(((((....))))))))))))))))............((.....))))))... ( -27.50)
>DroSec_CAF1 19660 120 - 1
UUUUCUUUGCUGUUUUGCUCUUUCUGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGGGGAACUUUCCUUGGAGCAGAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC
......(((((((((((((((.......((.((((.(((.(.((((.....)))))))).)))).))(((((....))))))))))))))))............((.....))))))... ( -26.70)
>DroSim_CAF1 24552 120 - 1
UUUUCUUUGCUGUUUUGCUCUUUCUGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGGGGAACUUUCCUUGGAGCAGAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC
......(((((((((((((((.......((.((((.(((.(.((((.....)))))))).)))).))(((((....))))))))))))))))............((.....))))))... ( -26.70)
>DroEre_CAF1 5723 119 - 1
UU-UCUUUGCUGUUUUGCUUUUUCUGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGGGGAACUUUCCUCCGAGCAUAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC
..-...((((.....(((.......)))........((.(((.(((((.((((.((((((....((((((((....))))))))....))...)))))))).)))))))).))))))... ( -28.80)
>DroYak_CAF1 77324 120 - 1
UUUUCUUUUCUGUUUUGCUUUUUCUGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGGGGAACUUUCCUUCGAGCAUAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC
...............(((.......)))((((...(((.(((.(((((.((((.((((((....((((((((....))))))))....))...)))))))).)))))))).))).)))). ( -24.00)
>consensus
UUUUCUUUGCUGUUUUGCUCUUUCUGCACGUUUUACGACUGACAUUAAUUGAAUGCGUCUUAAAUUGGGGGAACUUUCCUUGGAGCAGAGCACACGCUUCAUUUGAUUUAUUCGCAAUGC
......((((((((((((((........((.((((.(((.(.((((.....)))))))).)))).))(((((....))))).))))))))))............((.....))))))... (-23.42 = -23.46 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:25 2006