Locus 8281

Sequence ID 3L_DroMel_CAF1
Location 21,733,527 – 21,733,647
Length 120
Max. P 0.929045
window13545

overview

Window 5

Location 21,733,527 – 21,733,647
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.50
Mean single sequence MFE -30.52
Consensus MFE -22.84
Energy contribution -26.12
Covariance contribution 3.28
Combinations/Pair 1.06
Mean z-score -2.42
Structure conservation index 0.75
SVM decision value 1.19
SVM RNA-class probability 0.929045
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21733527 120 - 23771897
ACAGAAAAUUGUAUUUUAGGAGUGCCAUGAAGAACUAUUUGAAGAAUUCUUAAGAAGAGAGUAAUCAAAUGGAGACUUGCCCACUCCUAAGCGAUUUUCAAUUAGGCAUUUUACAACUAA
...(((((((((...(((((((((.....(((..((((((((...((((((.....))))))..))))))))...)))...))))))))))))))))))..................... ( -31.70)
>DroSec_CAF1 15217 120 - 1
AUAGAAAAGUGUAUUUUAGGAGUGCCAUGAGGAACUAUUUGAAGAAUUCUUAAGAAGAGAGUAAUCAAAUGGAGCCUUGCCCACUCCUAAGCGGUUUUCAAUUAGGUAUUUUACAACUAA
...(((((.(((...(((((((((...(((((..((((((((...((((((.....))))))..))))))))..)))))..)))))))))))).)))))..................... ( -36.30)
>DroSim_CAF1 20285 120 - 1
AUAGAAAAGUGUAUUUUAGGAGUGCCAUGAGGAACUAUUUGAAGAAUUCUUAAGAAGAGAGUAAUCAAAUGGAGCCUUGCCCACUCCUAAGCGGUUUUCAAUUAGGUAUUUUACAACUAA
...(((((.(((...(((((((((...(((((..((((((((...((((((.....))))))..))))))))..)))))..)))))))))))).)))))..................... ( -36.30)
>DroEre_CAF1 1637 120 - 1
AGAGAAAAUUGUAUUUCAGGAGUGCCAUGAGGAACUAUUUGAUGAAUUCCAAAGAAGAGAGUAAUCCAAAGGAGCCUUGCCCACUCCUCAGCCUUUUUCAAUUAGGUCUUUUACAACUAA
........(((((....(((((((...(((((..((.((.(((..(((((......).)))).))).)).))..)))))..)))))))..((((.........))))....))))).... ( -23.30)
>DroYak_CAF1 66538 120 - 1
AGAAAAAAGUGUAUUCAAGGAGUGCCGUGAGGAACUAUUUGAUGAAUUCCAAAGGAAAGAGUAAUUCACAGGAGCCUGGCCCACUUCUAAGCCGUUUUCAAUUAGGUCUUUUACACCUAA
.(((((..((.......((((((((((((((..(((.((((........))))......)))..)))))((....)))))..))))))..))..)))))..((((((.......)))))) ( -25.00)
>consensus
AGAGAAAAGUGUAUUUUAGGAGUGCCAUGAGGAACUAUUUGAAGAAUUCUUAAGAAGAGAGUAAUCAAAUGGAGCCUUGCCCACUCCUAAGCGGUUUUCAAUUAGGUAUUUUACAACUAA
...(((((.(((...(((((((((...(((((..((((((((...((((((.....))))))..))))))))..)))))..)))))))))))).)))))..................... (-22.84 = -26.12 +   3.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:20 2006