Locus 8277

Sequence ID 3L_DroMel_CAF1
Location 21,730,033 – 21,730,150
Length 117
Max. P 0.538111
window13539

overview

Window 9

Location 21,730,033 – 21,730,150
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 86.04
Mean single sequence MFE -15.56
Consensus MFE -10.18
Energy contribution -11.05
Covariance contribution 0.87
Combinations/Pair 1.11
Mean z-score -1.63
Structure conservation index 0.65
SVM decision value 0.01
SVM RNA-class probability 0.538111
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21730033 117 + 23771897
UUUAAUAUUUGGAUAAAAAAACUCUCCCAAUUCUUACUUCCCAACAAUGACUGCCAAAUAAUAGUGGUCAUCUCUAUCGCCCCAAUACAGCAAUAUACAUACGUAUGUAUAUAUGUA
........((((..............))))................(((((..(.........)..)))))..............((((...((((((((....)))))))).)))) ( -15.44)
>DroSec_CAF1 11783 117 + 1
UUUUAUAUAUGCACAAAAAUACUCUCCCAAUUCUUACUUCCCAACAAUGACUGCCAAAUAAUGGUGGUCAUCUCUAUCGCCCCUAUACAGCAAUAUACAUACGUAUGUAUAUAUGUA
...(((((((((..................................(((((..(((.....)))..))))).......................((((....))))))))))))).. ( -20.90)
>DroSim_CAF1 16833 117 + 1
UUUAAUAUAUGCACAAAAUUACUCUCCCAAUUCUUACUUCCCAACAAUGACUGCCAAAUAAUAGUGGUCAUCUCUAUCGCCCCUAUACAGCAAUAUACAUACGUAUGUAUAUAUGUA
....((((((((..................................(((((..(.........)..))))).......................((((....))))))))))))... ( -14.60)
>DroYak_CAF1 62810 116 + 1
UCUUAGU-UUUGAUAAAUAUAUUGCCCUAAUUCUAGUUUCCCAGCAACCACUACCAAAUUAUAUUGAUCAUCUCUAUCGCACCAAUACAGCAAUAUUCAUACGUAUGUAUAUAUGCA
...(((.-..((((.((((((((((...(((....))).....))))............)))))).))))...))).............(((((((.(((....))).)))).))). ( -11.30)
>consensus
UUUAAUAUAUGCACAAAAAUACUCUCCCAAUUCUUACUUCCCAACAAUGACUGCCAAAUAAUAGUGGUCAUCUCUAUCGCCCCAAUACAGCAAUAUACAUACGUAUGUAUAUAUGUA
..............................................((((((((.........))))))))..................(((((((((((....)))))))).))). (-10.18 = -11.05 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:14 2006