Locus 8276

Sequence ID 3L_DroMel_CAF1
Location 21,728,336 – 21,728,436
Length 100
Max. P 0.942728
window13538

overview

Window 8

Location 21,728,336 – 21,728,436
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.12
Mean single sequence MFE -34.08
Consensus MFE -17.41
Energy contribution -19.72
Covariance contribution 2.31
Combinations/Pair 1.17
Mean z-score -2.11
Structure conservation index 0.51
SVM decision value 1.33
SVM RNA-class probability 0.942728
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21728336 100 - 23771897
GGAUCUCCGGAGCUC--------UGGAGCUCUGGAG-------CUGUGAGCUCAACUUGUCAACCCAAAUAGGUGGAGGUAAAGU-----CAGUGCGUGGCUGGGCGAUCAAAAUUAAAG
.(((((((((((((.--------...)))))))))(-------((...(.(((.((((((........)))))).))).)..(((-----((.....))))).))))))).......... ( -33.30)
>DroPse_CAF1 37354 94 - 1
AGAGCUCCAG-------------UAGAGUUCCAAAG-------CUUUGAGCUCAAGUUGUCAACCCAAAUAGAUGAAGACGAAACGACUAGACUGCGUGGCUGAGCGAUCAAAA------
.((((((...-------------..)))))).....-------.((((((((((.(((.(((.(.......).))).)))(..(((.(......))))..))))))..))))).------ ( -20.40)
>DroSec_CAF1 9994 108 - 1
GGAUCUCCGGAGCUCUGGAGCUCUGGAGCUCUGGAG-------CUGUGAGCUCAACUUGUCAACCCAAAUAGGUGGAGGUAAAGU-----CAGUGCGUGGCUGGGCGAUCAAAAUCAAAA
.((((((((((((((..(....)..))))))))))(-------((...(.(((.((((((........)))))).))).)..(((-----((.....))))).))))))).......... ( -40.80)
>DroSim_CAF1 15034 108 - 1
GGAUCUCCGGAGCUCCGGAGCACUGGAGCUCUGGAG-------CUGUGAGCUCAACUUGUCAACCCAAAUAGGUGGAGGUAAAGU-----CAGUGCGUGGCUGGGCGAUCAAAAUCAAAA
.(((((((((((((((((....)))))))))))))(-------((...(.(((.((((((........)))))).))).)..(((-----((.....))))).))))))).......... ( -42.40)
>DroPer_CAF1 36008 94 - 1
AGAGCUCCAG-------------UAGAGUUCCAAAG-------CUUUGAGCUCAAGUUGUCAACCCAAAUAGAUGAAGACGAAACGACUAGACUGCGUGGCUGAGCGAUCAAAA------
.((((((...-------------..)))))).....-------.((((((((((.(((.(((.(.......).))).)))(..(((.(......))))..))))))..))))).------ ( -20.40)
>DroYak_CAF1 60806 108 - 1
AGAUCUCCGGAGCUCC-GAGCUCUGGAGCUCUGGAGUCUGGACCUGUAAGCUCAACUUGUCAACUCAAAUAGGUUGAGGUAAAUU-----CAGUGCGUGGCUGGGCGAUCAAAA------
.(((((((((((((((-(.....))))))))))))(((..(.(((((((.((((((((((........)))))))))).).....-----...)))).)))..)))))))....------ ( -47.20)
>consensus
AGAUCUCCGGAGCUC________UGGAGCUCUGGAG_______CUGUGAGCUCAACUUGUCAACCCAAAUAGGUGGAGGUAAAGU_____CAGUGCGUGGCUGGGCGAUCAAAA______
.((((((((((((((..........))))))))))..............(((((..(((((.(((......)))...)))))............((...))))))))))).......... (-17.41 = -19.72 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:13 2006