| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,714,434 – 21,714,535 |
| Length | 101 |
| Max. P | 0.791878 |
| Location | 21,714,434 – 21,714,535 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.39 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -8.88 |
| Energy contribution | -9.76 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.791878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21714434 101 + 23771897 UGUCUACUUUUUUUUUUGAAGUGGGCCCAUCCUCUGCAGCCGCAGACUAUUUAACCAUUUUUACUACUACUAAAAAUUCCGGCAACAAAU---GCGACUGUA----UC------------ .(((((((((.......)))))))))........(((((.((((............(((((((.......)))))))...(....)...)---))).)))))----..------------ ( -22.20) >DroPse_CAF1 21933 119 + 1 UUUCUUCUUCUGUUUUUCAAGGCGGCCCA-CCUCUGCCGCCGCAGACUAUUUAACAAUUUUUACUACUACUAAAAAUUCCAGCAACAAACUCUGCUACUCUGAUGCUCUGCUGCUCUCCC ....................((((((...-.....))))))(((((.((((....((((((((.......))))))))..((((........)))).....)))).)))))......... ( -25.40) >DroSim_CAF1 629 100 + 1 UGUCUACUUUUUUUUUU-AAGUGGGCCCAUCCUCUGCCGCCGCAGACUAUUUAACCAUUUUUACUACUACUAAAAAUUCCGGCAACAAAU---GCGACUGUA----UC------------ .((((((((........-))))))))........(((.(.((((............(((((((.......)))))))...(....)...)---))).).)))----..------------ ( -16.60) >DroPer_CAF1 21000 119 + 1 UUUCUUCUUCUGUUUUUCAAGGCGGCCCA-CCUCUGCCGCCGCAGACUAUUUAACAAUUUUUACUACUACUAAAAAUUCCAGCAACAAACUCUGCUACUCUGAUGCUCUGCUGCUCUCCC ....................((((((...-.....))))))(((((.((((....((((((((.......))))))))..((((........)))).....)))).)))))......... ( -25.40) >DroYak_CAF1 46746 99 + 1 UGUCUACUCUUUU--UUGAAGCGGGCCCAUCCUCUGCCGCCGCAGACUAUUUAACCAUUUUUACUACUACUAAAAAUUCCGGCAACAAAU---GCGACUGUC----CC------------ .(((.........--......((((.......(((((....)))))..........(((((((.......)))))))))))(((.....)---)))))....----..------------ ( -14.50) >consensus UGUCUACUUUUUUUUUUCAAGGGGGCCCAUCCUCUGCCGCCGCAGACUAUUUAACCAUUUUUACUACUACUAAAAAUUCCGGCAACAAAU___GCGACUGUA____UC____________ ...((((((.........))))))(((.....(((((....)))))..........(((((((.......)))))))...)))..................................... ( -8.88 = -9.76 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:48 2006