| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,707,841 – 21,707,960 |
| Length | 119 |
| Max. P | 0.858365 |
| Location | 21,707,841 – 21,707,960 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.47 |
| Mean single sequence MFE | -32.15 |
| Consensus MFE | -24.39 |
| Energy contribution | -24.73 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.858365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21707841 119 + 23771897 GCGCCAGAAUUCAAAUACAACGACUUGACAACAUUGCCGUAUUGGAAAAAGAAUAUUCCAAGAGAGCUACCAGAUCAGGUAGUAAAGAUAAAAGCGUGCGAUAUUGG-GUUUGGCGCUUU ((((((((..((((..........))))(((.((((((((.((((((........))))))....((((((......))))))..........))).))))).))).-.))))))))... ( -36.70) >DroSec_CAF1 47213 118 + 1 AAGCCAGAAUUCAUAAACAACGACUUGACAACAUUGCCGUACUGGGAAAAAA-UAUUCCAAGAGCGCUACCAGAUCAGGUAAUAAAGAAAAAAGCGUGUGGUGUUGG-GUUUGGCGCUUU ..((((((.........(((....))).((((((..((((.((.((((....-..)))).)).....((((......))))............))).)..)))))).-.))))))..... ( -29.80) >DroSim_CAF1 42006 119 + 1 AAGCCAGAACUCAUAAGCAACGAUUUGACAACAUUGCCAUACUGGGAAAAAA-AUUUCCAAGAGCGCUACCAGAUCAGGAAAUAAAGAAAAAAGCGUGUGGUGUUGGGGUUUGGCGNNNN ..((((((.(((.....(((....))).((((((..(....((.(((((...-.))))).)).(((((........................))))))..)))))))))))))))..... ( -29.96) >consensus AAGCCAGAAUUCAUAAACAACGACUUGACAACAUUGCCGUACUGGGAAAAAA_UAUUCCAAGAGCGCUACCAGAUCAGGUAAUAAAGAAAAAAGCGUGUGGUGUUGG_GUUUGGCGCUUU ..((((((.........(((....))).((((((((((((..(((((........))))).......((((......))))............))).)))))))))...))))))..... (-24.39 = -24.73 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:43 2006