Locus 8253

Sequence ID 3L_DroMel_CAF1
Location 21,677,941 – 21,678,033
Length 92
Max. P 0.637496
window13497

overview

Window 7

Location 21,677,941 – 21,678,033
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.46
Mean single sequence MFE -33.87
Consensus MFE -21.82
Energy contribution -23.07
Covariance contribution 1.25
Combinations/Pair 1.15
Mean z-score -1.75
Structure conservation index 0.64
SVM decision value 0.21
SVM RNA-class probability 0.637496
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21677941 92 + 23771897
GUGACAUUCCCCUCUUGAUCCCGGAUAACCGCA--CUAGUUGUGGUUUCCGGA---------ACCUCCGGAUCCCCUCCGGGGCGGAUAACAGCCGCCUGGAC
.......(((..........(((((.(((((((--.....)))))))))))).---------....(((((.....)))))(((((.......))))).))). ( -35.10)
>DroSec_CAF1 21618 92 + 1
GUGACAUCCCCCUCUUGAUCCCGGAUAACCGCA--CUAGUUGUGGUUUCCGGA---------ACCUCCGGAUCCGCUCCGGGGCGGAUAACAGCCGCCUGGAC
......(((...........(((((.(((((((--.....)))))))))))).---------....(((((.....)))))(((((.......))))).))). ( -35.20)
>DroSim_CAF1 16234 92 + 1
GUGACAUCCCCCUCUUUAUCCCGGAUAACCGCA--CUAGUUGUGGUUUCCGGA---------ACCUCCGGAUCCGCUCCGGGGCGGAUAACAGCCGCCUGGAC
......(((...........(((((.(((((((--.....)))))))))))).---------....(((((.....)))))(((((.......))))).))). ( -35.20)
>DroEre_CAF1 15097 92 + 1
GUGACAUCCCCCUCUUGAUCCCGGAUAACCGCA--CUAGUGGUGGUUUCCGGA---------ACCUCCGAAUCCCCUCCGGGCCGGAUAACUGCCGCCUGGAC
....................(((((.((((((.--(....)))))))))))).---------..............(((((((.((.......))))))))). ( -29.40)
>DroYak_CAF1 13118 92 + 1
GUGACAUCACCCUCUUGAUCCCGGAUAACCGCA--CUAGUUGUGGUUUCCGGA---------ACCUCCGAAUCCCCUCCGGGACGGAUAACAGCCGCCUGGAC
(((....)))..........(((((.(((((((--.....)))))))))))).---------..............((((((.(((.......))))))))). ( -31.80)
>DroPer_CAF1 21446 92 + 1
GUCACAUCUGCCUCC-----------AAGCUCAAUCUGGUGGUGGUCUCCUGCUCGGGCUCGAGCUCGGGCUCGAGCUCAGGACGUAUAACAGCUGCCUGGAC
(((....(..((.((-----------(.........))).))..)......(((((((((((....))))))))))).((((..((......))..))))))) ( -36.50)
>consensus
GUGACAUCCCCCUCUUGAUCCCGGAUAACCGCA__CUAGUUGUGGUUUCCGGA_________ACCUCCGGAUCCCCUCCGGGGCGGAUAACAGCCGCCUGGAC
....................(((((.((((((.........)))))))))))........................((((((.(((.......))))))))). (-21.82 = -23.07 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:34 2006