Locus 8251

Sequence ID 3L_DroMel_CAF1
Location 21,676,612 – 21,676,702
Length 90
Max. P 0.612514
window13495

overview

Window 5

Location 21,676,612 – 21,676,702
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 80.87
Mean single sequence MFE -24.17
Consensus MFE -18.54
Energy contribution -17.93
Covariance contribution -0.61
Combinations/Pair 1.16
Mean z-score -1.25
Structure conservation index 0.77
SVM decision value 0.16
SVM RNA-class probability 0.612514
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21676612 90 + 23771897
ACCCGACAUCUCGGCAUCCCGACAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAACCGUGGAACGUGCGUGGCAUCCGGAAA
........((.(((.((.(((((((((((((..........))))))))))(((..((((((....)))))).))).))).))))))).. ( -25.30)
>DroPse_CAF1 19912 75 + 1
---------------CUCCAAGCAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAGCCGUGAAACGUGCGUGGCAUGCGAAAG
---------------..(((.((((((((((..........))))))))))(((..((((((....)))))).))).))).......... ( -20.20)
>DroEre_CAF1 13834 90 + 1
UCCGGACUUCCCGCCAUCCCGACAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAACCGUGGAACGUGCGUGGCAUCCGGAAA
((((((......(((((....((((((((((..........))))))))))(((..((((((....)))))).)))))))).)))))).. ( -32.10)
>DroYak_CAF1 11844 82 + 1
UCCGGG--------CAUCCCGACAUCCGUAUUAAGUUUGACGUGCGGAUGUGCGAAGUUUUAACCGUGGAACGUGCGUGGCAUCCGGAAA
((((((--------....((.((((((((((..........))))))))))(((..((((((....))))))...)))))..)))))).. ( -28.30)
>DroAna_CAF1 10846 69 + 1
---------------------GCAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAACCGUGGAACGUGCGUGGCAUGCGAAAA
---------------------((((((((((..........))))))))))((...((((((....))))))((((...))))))..... ( -18.90)
>DroPer_CAF1 20072 75 + 1
---------------CUCCAAGCAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAGCCGUGAAACGUGCGUGGCAUGCGAAAG
---------------..(((.((((((((((..........))))))))))(((..((((((....)))))).))).))).......... ( -20.20)
>consensus
_______________AUCCCGACAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAACCGUGGAACGUGCGUGGCAUCCGAAAA
.....................((((((((((..........))))))))))(((..((((((....)))))).))).............. (-18.54 = -17.93 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:32 2006