Locus 8250

Sequence ID 3L_DroMel_CAF1
Location 21,675,759 – 21,675,855
Length 96
Max. P 0.865960
window13494

overview

Window 4

Location 21,675,759 – 21,675,855
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 75.05
Mean single sequence MFE -26.60
Consensus MFE -17.35
Energy contribution -17.77
Covariance contribution 0.42
Combinations/Pair 1.29
Mean z-score -1.49
Structure conservation index 0.65
SVM decision value 0.85
SVM RNA-class probability 0.865960
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21675759 96 + 23771897
AACUGGGGCUCCGUGGACACGUCCACAGCUCUCCCAGCUACCCUCGCUGUGGAAUCCCGUACGGGUCGGGCUUUUGUAAAAGCUCCUUAUCCACCA
....((((((..(((((....)))))((((((((((((.......)))).)))..(((....)))..)))))........)))))).......... ( -35.10)
>DroSec_CAF1 19400 96 + 1
AACUGGGUCUCCGUGGACACAACCUCAGCUCCCCCAGCUCCCCCCGCUGUGGAAUCCCGUUCCGGUCGGGCUUUUGUAAAAGCUCCUUAUCCACCG
....((....))(((((....(((..........((((.......)))).(((((...)))))))).(((((((....)))))))....))))).. ( -23.90)
>DroSim_CAF1 14024 96 + 1
AACUGGGUCUCCGUGGACACUACCACAGCUCCCCCAGCUCCCCCCGCUGUGGAAUCCCGUUCCGGUCGGGCUUUUGUAAAAGCUCCUUAUACACCG
....(((..(((((((......))))........((((.......)))).)))..)))....((((.(((((((....))))))).......)))) ( -27.20)
>DroEre_CAF1 13003 87 + 1
AACUGGGACUCCGUAGACACUACCACAGCUCCUCCAU---------CUGUGGAAUCCCGUUCCAGUCGGGCUUUUAUAAAGGCGCCUUACCCACCA
.((((((((...((....))..((((((.........---------))))))......)))))))).(((((((....))))).)).......... ( -23.40)
>DroYak_CAF1 11013 87 + 1
AAUGGGGAUUCCGUGGACAUUACCACAGCGCCCCCAG---------CUGCGGAAUCCCGUUCCAGUCGAGCAUUUAUGAAUGCCCCUUAUCCACCA
....((((((((((((......)))).((((.....)---------).))))))))))...........(((((....)))))............. ( -27.20)
>DroAna_CAF1 10009 93 + 1
ACAUGGGACUCACUGGACACUACCACU---ACCUUGGCUCCCCCUCCCGCUGAGGCACGUGCCGGUCGUGCCUUUGAAAAAGCACCCUAUCCUCCA
..(((((....(((((.(((.......---.(((..((..........))..)))...)))))))).((((..((....)))))))))))...... ( -22.80)
>consensus
AACUGGGACUCCGUGGACACUACCACAGCUCCCCCAGCUCCCCCCGCUGUGGAAUCCCGUUCCGGUCGGGCUUUUGUAAAAGCUCCUUAUCCACCA
....(((..(((((((......))))........((((.......)))).)))..))).........(((((((....)))))))........... (-17.35 = -17.77 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:31 2006