Locus 8240

Sequence ID 3L_DroMel_CAF1
Location 21,647,110 – 21,647,209
Length 99
Max. P 0.850075
window13474

overview

Window 4

Location 21,647,110 – 21,647,209
Length 99
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 71.70
Mean single sequence MFE -31.62
Consensus MFE -14.30
Energy contribution -17.14
Covariance contribution 2.84
Combinations/Pair 1.24
Mean z-score -1.92
Structure conservation index 0.45
SVM decision value 0.78
SVM RNA-class probability 0.850075
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21647110 99 - 23771897
--------CUUU---UUGGGCCAAGACAGUGCCAAUUGCAGCUUGCAGCUGGAACUAAAGUCUUGGGCUAAGCUAUGCUGGGACCCAAACUCGGUUGGCAUCCUUAUUCC
--------....---((((.((((((((((.(((.((((.....)))).))).)))...))))))).))))((((.((((((.......))))))))))........... ( -35.10)
>DroSec_CAF1 23670 99 - 1
--------CUUU---UUGGGCCAAGACAGUGUCAAUUGCAGCUUGCAGCUGGAACUAAAGUCUUGGGCUAAGCUAUGGUGGUUGCCAAGCUCGGUUGGCAUCCUUAUUUC
--------...(---((((.((((((((((..((.((((.....)))).))..)))...))))))).))))).......((.((((((......)))))).))....... ( -33.20)
>DroSim_CAF1 24940 99 - 1
--------CUUU---UUGGGCCAAGACAGUGCCAAUUGCAGCUUGCAGCUGGAACUAAAGUCUUGGGCUAUGCUAUGGUGGGAGCCAAGCUCGGUUGGCAUCCUUAUUCC
--------....---.(((.((((((((((.(((.((((.....)))).))).)))...))))))).)))......((.(((((((((......))))).))))....)) ( -35.30)
>DroEre_CAF1 22702 99 - 1
--------UUUU---UUGGGCCACAACAGUGCGAAUUGCAGCUCGGAGCUGCAACAAAAGUCUUGGGCUAAAAUAAGCUGAGAGCCCAGCUCCAUUGGUAUCCCUAUUCC
--------....---..(((......(((((.((.(((((((.....)))))))........(((((((.............))))))).)))))))....)))...... ( -28.42)
>DroYak_CAF1 31917 82 - 1
--------UUCU---UUGGGCCAAGACUA---G-------ACUCG-------UACUCAAGUCUUGGACUAAAAUAUGCUGGGAGUCAAGCUCCGUUGGCAUCCUUAUUCC
--------...(---((((.((((((((.---(-------(....-------...)).)))))))).)))))..(((((.((((.....))))...)))))......... ( -25.10)
>DroAna_CAF1 21410 105 - 1
GUUUUCGUUUUUUGUCUGGGCCAAGACUGUGCCAAUUGCCAGUUGGAU---GGGCUAAAGUG--AAGCUAGAAUCUGCUGUGAGCCCAACUCCGCUGGCAUCCUACUUCU
..................(((((....)).)))...(((((((.((((---(((((......--.(((........)))...))))))..)))))))))).......... ( -32.60)
>consensus
________CUUU___UUGGGCCAAGACAGUGCCAAUUGCAGCUUGCAGCUGGAACUAAAGUCUUGGGCUAAAAUAUGCUGGGAGCCAAGCUCCGUUGGCAUCCUUAUUCC
...............((((.(((((((........((.((((.....)))).)).....))))))).))))........(((.(((((......))))).)))....... (-14.30 = -17.14 +   2.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:13 2006