| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,630,320 – 21,630,414 |
| Length | 94 |
| Max. P | 0.731942 |
| Location | 21,630,320 – 21,630,414 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.09 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -20.39 |
| Energy contribution | -21.70 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.731942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21630320 94 - 23771897 GCACAUAAUUCAUAAUGGCCAA--------GUGAGCUGACAGACGGCUCAAAUCGCA------------------GAGAAAGAUUUUCUAGUUGGUCUCGGCCCAAACGGAAUUAAGCUA ((...((((((.....((((..--------.(((((((.....))))))).......------------------((((..((((....))))..))))))))......)))))).)).. ( -29.50) >DroSec_CAF1 6762 94 - 1 GCACAUAAUUCAUAAUGGCCAA--------GUGAGCUGACAGACGACUCAAAUCGGA------------------GAGAAAGAUUUUCUAGUUGGUCUCGGCCCAAACGGAAUUAAGCCA ((...((((((.....((((..--------.((((.((.....)).)))).......------------------((((..((((....))))..))))))))......)))))).)).. ( -22.50) >DroSim_CAF1 6802 94 - 1 GCACAUAAUUCAUAAUGGCCAA--------GUGAGCUGACAGACGGCUCAAAUCGGA------------------GAGAAAGAUUUUCUAGUUGGUCUCGGCCCAAACGGAAUUAAGCCA ((...((((((.....((((..--------.(((((((.....))))))).......------------------((((..((((....))))..))))))))......)))))).)).. ( -29.10) >DroEre_CAF1 5879 94 - 1 GCACAUAAUUCAUAAUGGCCAA--------GUGAGCUGACAGACGGCUCAAAUCGGA------------------GAGAAAGAUUUUCUCGUUGGUCUCGGCCCAAACGGAAUUAAGCCA ((...((((((.....((((..--------.(((((((.....))))))).(((((.------------------(((((.....))))).)))))...))))......)))))).)).. ( -28.40) >DroYak_CAF1 16500 88 - 1 GCACAUAAUUCAUAAUGGCCAA--------GUGAGCUGACAGACGGCUCAAAUCGGA------------------GAGAAAUAUUUUCUAGUUG------GCCCAAACGGAAUUAAGCCA ((...((((((.....((((((--------.(((((((.....)))))))....(((------------------((......)))))...)))------)))......)))))).)).. ( -25.70) >DroAna_CAF1 5399 120 - 1 GCGCAUAAUUCAUAAUGGCCAAAUCAGCAAAUGAGCUGACAGACAGCACAAAUCAGAAGCUGCGGUUAAGCUAGUGAAAUAAAUUUUCUCGCUGCUCUUGGCCAAAACGGAAUUAAGCCA (.((.((((((....(((((((.(((((......)))))..((((((..........((((.......)))).(.((((.....)))).))))).))))))))).....)))))).))). ( -37.60) >consensus GCACAUAAUUCAUAAUGGCCAA________GUGAGCUGACAGACGGCUCAAAUCGGA__________________GAGAAAGAUUUUCUAGUUGGUCUCGGCCCAAACGGAAUUAAGCCA ((...((((((.....((((...........(((((((.....))))))).........................((((..(((......)))..))))))))......)))))).)).. (-20.39 = -21.70 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:00 2006