Locus 8219

Sequence ID 3L_DroMel_CAF1
Location 21,600,341 – 21,600,449
Length 108
Max. P 0.730139
window13444

overview

Window 4

Location 21,600,341 – 21,600,449
Length 108
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 74.86
Mean single sequence MFE -40.69
Consensus MFE -22.49
Energy contribution -22.50
Covariance contribution 0.01
Combinations/Pair 1.45
Mean z-score -1.66
Structure conservation index 0.55
SVM decision value 0.42
SVM RNA-class probability 0.730139
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21600341 108 - 23771897
UACAAGGCCGAUGACCACGGAUUUGUACCAGAGGGCGGAGCAAUCCUGCCCCAGAUUUCGCUGGCCGCCAAGCAGGUCAGCGAGCAGGUGCCCC---AACCAGAUCUUGAC
..((((((((.......)))....(((((.(.(((((((....))).)))))....((((((((((........))))))))))..)))))...---.......))))).. ( -43.00)
>DroVir_CAF1 35855 111 - 1
UACAAGGCCGAUAAUCGCGGUUUUGUGCCCGAGGGAGGCAACAUAUUGCCACAGAUAUCGCUGGCCGCCAAGCUGGCCAGUGAGCAGAAGCAGCUUUUUCCCGAUACGGAC
((((((((((.......)))))))))).(((.(((((((((....))))).......(((((((((((...)).)))))))))((....)).......))))....))).. ( -45.00)
>DroGri_CAF1 30994 111 - 1
UAUAAGGCCGAUGAUCACGGCUUUGUGCCCGAGGGCGGCAACAUAUUGCCACAGAUAUCGGAGGCCGCCAAGGUGACCAGUGAGCUGAUGCCGCCGAUGCCUGAUUUGGAU
.(((((((((.......)))))))))(((....)))(((((....))))).(((.((((((.((((((....)))..(((....)))..))).)))))).)))........ ( -45.30)
>DroWil_CAF1 43340 108 - 1
UAUAAGGCCGAUGAUCAUGGCUUUGUUCCCGAAGGUGGUGAUAUAUUGCCCCAGAUAUCGGUGGCCGCCAAACAGGUCAGUGAGAUAGUGGCUC---AACCAGAUUUGGAU
.(((((((((.......)))))))))..(((((..((((........(((.......(((.(((((........))))).)))......)))..---.))))..))))).. ( -32.92)
>DroAna_CAF1 31785 108 - 1
UACAAGGCCGAUGACCAUGGCUUUGUUCCAGAGGGAGGCGCCAUCCUGCCACAAAUCUCGGUGGCUGCCAAGCAAGUAAGCGAGCAGGUUUCUC---AGCCUGAUCUGGAA
.(((((((((.......)))))))))((((((...((((.....((((((((........))))).((...((......))..)))))......---.))))..)))))). ( -39.50)
>DroPer_CAF1 35729 108 - 1
UACAAGGCCGACGACCAUGGCUUCGUACCCGAAGGCGGUGCCAUAUUGCCGCAGAUUUCGGUGGCCGCCAAACAAGUUAGCCAGCUGGUGGCCC---AGCCCGAUCUGGAG
.....(((..((.....((((...((((((....).)))))......(((((.(....).))))).)))).....))..))).(((((....))---)))((.....)).. ( -38.40)
>consensus
UACAAGGCCGAUGACCACGGCUUUGUACCCGAGGGCGGCGACAUAUUGCCACAGAUAUCGGUGGCCGCCAAGCAGGUCAGCGAGCAGGUGCCCC___AGCCAGAUCUGGAC
((((((((((.......))))))))))((.((.(((((((......)))).......(((.(((((........))))).)))...............)))...)).)).. (-22.49 = -22.50 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:41 2006