| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,581,687 – 21,581,785 |
| Length | 98 |
| Max. P | 0.678996 |
| Location | 21,581,687 – 21,581,785 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.55 |
| Mean single sequence MFE | -34.73 |
| Consensus MFE | -26.49 |
| Energy contribution | -26.93 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21581687 98 - 23771897 -------------CUCUGGGGUCUCGACUUCUCGUGAAUUCGGGACUGGAUCGAUCGGCCAGGGAGCUGGUUGGUUAUUCGGCUGGAGUCGCCCAUUGACAUUUAAAUUAU -------------.((..(((((((((.(((....))).))))))))((((.((((((((((....))))))))))))))..)..))((((.....))))........... ( -36.30) >DroEre_CAF1 12430 99 - 1 ----GGGUCUGAGGUCUGGGGUCUCGACUUCUCGUGAAUUCGGGACUGAA----UCGGCCAGGGAGCUGGUU----AUUCGGAUGGAGUCGCCCAUUGACAUUUAAAUUAU ----((((..(((..(...)..)))((((((((.((....)).))(((((----(.((((((....))))))----))))))..))))))))))................. ( -34.70) >DroYak_CAF1 9835 103 - 1 UUUUGGGUAUGGGGUCUGGGGUCUCGACUUCUCGUGAAUUGGGAACUGGA----UCGGCCAGUGAGCUGGUU----AUUCGGCUGGAGUCGCCCAUUGACAUUUAAAUUAU ...(((((....((((..(..((((((.(((....))))))))).)..))----))(((...(.((((((..----..)))))).).))))))))................ ( -33.20) >consensus ____GGGU_UG_GGUCUGGGGUCUCGACUUCUCGUGAAUUCGGGACUGGA____UCGGCCAGGGAGCUGGUU____AUUCGGCUGGAGUCGCCCAUUGACAUUUAAAUUAU .............(((..(((...((((((((((......)))..(((((......((((((....)))))).....)))))..))))))))))...)))........... (-26.49 = -26.93 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:38 2006