| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,574,694 – 21,574,797 |
| Length | 103 |
| Max. P | 0.842333 |
| Location | 21,574,694 – 21,574,797 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.50 |
| Mean single sequence MFE | -37.20 |
| Consensus MFE | -31.22 |
| Energy contribution | -31.00 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21574694 103 + 23771897 -----------------UUGAAUAAAGGCGCCAACUGGGCAGCACUGGUAGCGCCAUUUGGUUUGGGUCUCAGCUAGAUCCGUUAUCAAAGUGCUGCACCACACUGCUAUAAACAUUUGC -----------------.........((((.....((((((((((((((((((((....)))..((((((.....))))))))))))..)))))))).)))...))))............ ( -35.10) >DroSec_CAF1 21922 120 + 1 UAGCAAUGACCUUGCAUUUGAAUAAAGGCGCCAACUGGGCAGCACUGACAGCGCCAUGUGGUUUGGGUCUCAGCUAGAUCCGUUAUCAAAGUGCUGCACCACAGUGCUAUAAACUUUUGC ..((((.....))))...........(((((....(((((((((((((.((((((....)))..((((((.....))))))))).))..)))))))).)))..)))))............ ( -38.10) >DroSim_CAF1 22129 120 + 1 UAGCAAUAACCUUGCAUUUGAAUAAAGGCGCCAACUGGGCAGCACUGGCAGCGCCAUUUGGUUUGGGUCUCAGCUAGAUCCGUUAUCAAAGUGCUGCACCACACUGCUAUAAACUUUUGC (((((....((((...........)))).......((((((((((((((...))))((((((.(((((((.....)))))))..))))))))))))).)))...)))))........... ( -38.40) >consensus UAGCAAU_ACCUUGCAUUUGAAUAAAGGCGCCAACUGGGCAGCACUGGCAGCGCCAUUUGGUUUGGGUCUCAGCUAGAUCCGUUAUCAAAGUGCUGCACCACACUGCUAUAAACUUUUGC ..........................((((.....(((((((((((((.((((((....)))..((((((.....))))))))).))..)))))))).)))...))))............ (-31.22 = -31.00 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:28 2006