| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,570,492 – 21,570,612 |
| Length | 120 |
| Max. P | 0.710852 |
| Location | 21,570,492 – 21,570,612 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.87 |
| Mean single sequence MFE | -32.27 |
| Consensus MFE | -24.49 |
| Energy contribution | -24.50 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.710852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21570492 120 - 23771897 AGCUGUCCUGUAAUCGCCACUUGACUGGAAUUUAGAAUAGUUUUUCAGGGGCGCGACUUUCUCGAGAGCUCAUAAAACAGAAAAAGCUUUUUGUUUGUUGUUGUUUGCUUGUUUGCGGCG .(((((...((...((((.(((((..((((((......)))))))))))))))..))........((((.((..(((((((((....))))))))).....))...))))....))))). ( -29.60) >DroSec_CAF1 17873 102 - 1 AGCCGCCCUGUAAUCGCCACUUGACUAGAAUUUAGAAUAGUUCCUCAGGGGCGCGACUUUCGCGAGAGCUCAUAAAACAAAAAGAGCUCUUUGUUCAG--------GCGU---------- ...((((.((.(((.(((.(((((...(((((......))))).))))))))(((.....)))((((((((............)))))))).))))))--------))).---------- ( -33.60) >DroSim_CAF1 18093 102 - 1 AGCCGCCCUGUAAUCGCCACUUGACUAGAAUUUAGAAUAGUUCCUCAGGGGCGCGACUUUCGCGAGAGCUCAUAAAACAAAAAGAGCUCUUUGUUCAG--------GCGU---------- ...((((.((.(((.(((.(((((...(((((......))))).))))))))(((.....)))((((((((............)))))))).))))))--------))).---------- ( -33.60) >consensus AGCCGCCCUGUAAUCGCCACUUGACUAGAAUUUAGAAUAGUUCCUCAGGGGCGCGACUUUCGCGAGAGCUCAUAAAACAAAAAGAGCUCUUUGUUCAG________GCGU__________ .(((((...((...((((.(((((...(((((......))))).)))))))))..))....)))(((((((............)))))))................))............ (-24.49 = -24.50 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:24 2006