| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,564,223 – 21,564,336 |
| Length | 113 |
| Max. P | 0.522830 |
| Location | 21,564,223 – 21,564,336 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.89 |
| Mean single sequence MFE | -21.43 |
| Consensus MFE | -13.68 |
| Energy contribution | -13.13 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21564223 113 + 23771897 ACAUUCUUAUAAAUCCAGCAAUACUGUAGACACUAUAAACUUGGUGAACCA-------GUACGCCAUGGUUUUCUACAUGCCACAUGCUGGCCAAACAACUAUACAAAUCAAACAGAUUA ..............((((((....(((((((((((......)))))(((((-------........))))).)))))).......))))))...............((((.....)))). ( -23.20) >DroSec_CAF1 11867 112 + 1 ACAUUUUUAUAAAUCCACCAAUAAUAUUGGCACUAUAGACUUGGCGAACCAGCUUUUAGUACGCCAUGGUUUUCUACAAGCCACAUGCACGCCGAGCAACAAUACAAAUCAA-------- .................(((((...))))).......(.(((((((.....((.....))..((..((((((.....))))))...)).))))))))...............-------- ( -19.90) >DroSim_CAF1 12041 120 + 1 ACAUUUUUAUAAAUCCACCAAUAAUAUUGGCACUAUAGACUUGGCGAACCAGCUUUUAGUACGCCAUGGUUUUCUACAAGCCACAUGCACGCCGAGCAACAAUACAAAUCAAACAGAUUA ...........((((..(((((...))))).......(.(((((((.....((.....))..((..((((((.....))))))...)).))))))))..................)))). ( -21.20) >consensus ACAUUUUUAUAAAUCCACCAAUAAUAUUGGCACUAUAGACUUGGCGAACCAGCUUUUAGUACGCCAUGGUUUUCUACAAGCCACAUGCACGCCGAGCAACAAUACAAAUCAAACAGAUUA ........................(((((............(((((.((.........)).)))))((((((.....))))))................)))))................ (-13.68 = -13.13 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:15 2006