Locus 82

Sequence ID 3L_DroMel_CAF1
Location 307,451 – 307,554
Length 103
Max. P 0.557793
window118

overview

Window 8

Location 307,451 – 307,554
Length 103
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.76
Mean single sequence MFE -30.02
Consensus MFE -22.41
Energy contribution -22.38
Covariance contribution -0.02
Combinations/Pair 1.30
Mean z-score -1.17
Structure conservation index 0.75
SVM decision value 0.05
SVM RNA-class probability 0.557793
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 307451 103 - 23771897
AGCAGGAAUUAAUUUAUU---UGCUCU--CUAGAGUACGUGGUGUUUGAUGAAGCCGAUCGACUCUUCGAGAUGGGCUUCGGCGAGCAACUGAACGAAACGUUGCACA
.((((.............---(((((.--...)))))(((..((((((.(((((((.(((..........))).))))))).)))))).....))).....))))... ( -32.00)
>DroPse_CAF1 29679 108 - 1
GCCAAUAACCAAUGUCUACCUUCAUCUUUGCAGAUUAUGUAGUGUUUGAUGAAGCCGAUCGCCUCUUUGAAAUGGGCUUCGGGGAGCAGUUGAAUGAAACGCUGCAUC
........((.........(((((((.(((((.....))))).....)))))))((((..(((.(........)))).)))))).(((((..........)))))... ( -27.40)
>DroSec_CAF1 17229 104 - 1
AGCAGAAAUUAAUUUAAU---UGCUCU-CCUAGAGUACGUGGUGUUCGAUGAAGCCGAUCGACUCUUCGAGAUGGGAUUCGGCGAGCAACUGAACGAAACGCUGCACA
.((((.............---(((((.-....)))))(((..((((((.((..(((((....(((........)))..)))))...))..))))))..)))))))... ( -30.60)
>DroSim_CAF1 19578 104 - 1
AGCAGAAAUUAAUUUAAU---UGCUCU-CCUAGAGUACGUGGUGUUCGAUGAAGCCGAUCGACUCUUCGAGAUGGGAUUCGGCGAGCAACUAAACGAAACGCUGCACA
.((((.............---(((((.-....)))))(((..((((((.((((.((.(((..........))).)).)))).)))))).....))).....))))... ( -29.80)
>DroEre_CAF1 16921 104 - 1
AGCAGGAAAUAAUUUGGU---UGUUUA-CCUAGAGUACGUGGUGUUUGAUGAAGCCGAUCGACUAUUUGAGAUGGGCUUCGGCGAGCAGCUGAACGAAACGCUGCACA
.((((..........(((---.....)-))....((.((.(.((((((.(((((((.(((..........))).))))))).)))))).))).))......))))... ( -32.50)
>DroPer_CAF1 29780 108 - 1
GCCAAUAACCAAUGUCUACCUUCAUCUUUGCAGAUUAUGUAGUGUUUGAUGAAGCCGAUCGCCUCUUUGAAAUGGGCUUCGGCGAGCAGUUGAAUGAAACGCUGCAUC
(((......(((...((((....((((....))))...))))...)))..((((((.((..(......)..)).)))))))))..(((((..........)))))... ( -27.80)
>consensus
AGCAGAAAUUAAUUUAUU___UGCUCU_CCUAGAGUACGUGGUGUUUGAUGAAGCCGAUCGACUCUUCGAGAUGGGCUUCGGCGAGCAACUGAACGAAACGCUGCACA
.((((................(((((......)))))(((((((((((.(((((((.(((..........))).))))))).)))))).))..))).....))))... (-22.41 = -22.38 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:54 2006