| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,563,272 – 21,563,432 |
| Length | 160 |
| Max. P | 0.982331 |
| Location | 21,563,272 – 21,563,392 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -49.63 |
| Consensus MFE | -48.23 |
| Energy contribution | -48.23 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21563272 120 - 23771897 CUCCGGCUCUAGUUCCUCCUCUGGCCUCCAAGCGAAGGCAAAGAGCAGCAGCAGCGGCGCCACGAGCUUCGCUGGGUCCACUGGAUCCACGAAGAAGCAGCAUACCGGACUCAAGCCGGG ..((((((..(((((...(((((((......((....)).....((.((....)).)))))).)))(((((.(((((((...))))))))))))............)))))..)))))). ( -50.10) >DroSec_CAF1 10947 120 - 1 CUCCGGCUCUAGUUCCUCCUCUGGACUCCAAGCGAAAGCAAAAAGCAGUAGCAUCGGCGCCACGAGCUUCGCUGGGUCCACCGGAUCCACGAAGAAGCAGCAUACCGGACUCAAGCCGGG ..((((((..(((((...((((((.(.((..((....)).....((....))...)).)))).)))(((((.(((((((...))))))))))))............)))))..)))))). ( -48.60) >DroSim_CAF1 11116 120 - 1 CUCCGGCUCUAGUUCCUCCUCUGGCCUCCAAGCGAAAGCAAAAAGCAGCAGCAUCGGCGCCACGAGCUUCGCUGGGUCCACCGGAUCCACGAAGAAGCAGCAUACCGGACUCAAGCCGGG ..((((((..(((((...(((((((..((..((....)).....((....))...)).)))).)))(((((.(((((((...))))))))))))............)))))..)))))). ( -50.20) >consensus CUCCGGCUCUAGUUCCUCCUCUGGCCUCCAAGCGAAAGCAAAAAGCAGCAGCAUCGGCGCCACGAGCUUCGCUGGGUCCACCGGAUCCACGAAGAAGCAGCAUACCGGACUCAAGCCGGG ..((((((..(((((...((((((.(.((..((....)).....((....))...)).)))).)))(((((.(((((((...))))))))))))............)))))..)))))). (-48.23 = -48.23 + -0.00)
| Location | 21,563,312 – 21,563,432 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.89 |
| Mean single sequence MFE | -53.07 |
| Consensus MFE | -48.91 |
| Energy contribution | -50.47 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21563312 120 + 23771897 UGGACCCAGCGAAGCUCGUGGCGCCGCUGCUGCUGCUCUUUGCCUUCGCUUGGAGGCCAGAGGAGGAACUAGAGCCGGAGCCGGUGCCGGAGCUCUUGCUGCUUCCCGUCUUGUUGAUGG .(((..(((((((((((.((((((((..(((.(.(((((...(((((..((((...)))).)))))....))))).).)))))))))))))))).))))))..)))((((.....)))). ( -60.30) >DroSec_CAF1 10987 114 + 1 UGGACCCAGCGAAGCUCGUGGCGCCGAUGCUACUGCUUUUUGCUUUCGCUUGGAGUCCAGAGGAGGAACUAGAGCCGGAGC------CGGAGCUCUUGCUGCUUCCCGUCUUGUUGAUGG ((((((((((((((...((((((....)))))).((.....)))))))).))).)))))..(((((......(((.(((((------....))))).))).)))))((((.....)))). ( -43.90) >DroSim_CAF1 11156 120 + 1 UGGACCCAGCGAAGCUCGUGGCGCCGAUGCUGCUGCUUUUUGCUUUCGCUUGGAGGCCAGAGGAGGAACUAGAGCCGGAGCCGGUGCCGGAGCUCUUGCUGCUUCCCGUCUUGUUGAUGG .(((..(((((((((((.((((((((..(((.(.(((((...(((((..((((...)))).)))))....))))).).)))))))))))))))).))))))..)))((((.....)))). ( -55.00) >consensus UGGACCCAGCGAAGCUCGUGGCGCCGAUGCUGCUGCUUUUUGCUUUCGCUUGGAGGCCAGAGGAGGAACUAGAGCCGGAGCCGGUGCCGGAGCUCUUGCUGCUUCCCGUCUUGUUGAUGG .(((..(((((((((((.((((((((..(((.(.(((((...(((((..((((...)))).)))))....))))).).)))))))))))))))).))))))..)))((((.....)))). (-48.91 = -50.47 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:14 2006