Locus 8188

Sequence ID	3L_DroMel_CAF1
Location	21,537,149 – 21,537,241
Length	92
Max. P	0.547687

overview

Window 9

Location	21,537,149 – 21,537,241
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	85.15
Mean single sequence MFE	-29.64
Consensus MFE	-20.60
Energy contribution	-22.40
Covariance contribution	1.80
Combinations/Pair	1.12
Mean z-score	-1.67
Structure conservation index	0.70
SVM decision value	0.03
SVM RNA-class probability	0.547687
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21537149 92 - 23771897
CAGUCGUUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGCUUCCAGGAAGGGGAGGAGGG-CAUCCCUCUGGACCUCAAUACUCUGGAGGGA
...............((((((((.......))))))))..((((((((..((((.((((((-...))))))...)))).....)))))))).. ( -31.10)
>DroSec_CAF1 8512 92 - 1
CAGUCCUUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGCUUCCAGGAAGGGGAGGAGGG-CAACCCUCUGGACCUCAGCACUCUGGAGGGA
..((((((.......((((((((.......))))))))..(((((......))))))))))-)..(((((..((.........))..))))). ( -34.60)
>DroSim_CAF1 7570 92 - 1
CAGUCCUUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGCUUCCAGGAAGGGGAGGAGGG-CAACCCUCUGGACCUCAGCACUCUGGAGGGA
..((((((.......((((((((.......))))))))..(((((......))))))))))-)..(((((..((.........))..))))). ( -34.60)
>DroEre_CAF1 26442 81 - 1
CAGUCCUUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGGUUCCAAGAAGGUGAGGAGGG-GAUCCCC-UGGA--CCU--------AAGGGA
...((((((......((((((((.......))))))))((((((((......))...((((-....)))-))))--)))--------)))))) ( -24.20)
>DroYak_CAF1 26825 85 - 1
CAGUCCAUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGGUUCCAAGAAGGGGAGGAGGGAGAUCCCUAUGGAUCCCU--------AAGAGA
...(((.........((((((((.......))))))))...((((......)))))))(((.(((((....))))))))--------...... ( -23.70)
>consensus
CAGUCCUUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGCUUCCAGGAAGGGGAGGAGGG_CAUCCCUCUGGACCUCA__ACUCUGGAGGGA
...((((((((....((((((((.......))))))))............((((.((((((....))))))...)))).......)))))))) (-20.60 = -22.40 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:58 2006